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hypothetical_protein_pv_309

Euk-Vir

Pithovirus_sibericum

hypothetical_protein_pv_309__YP_009001211__Pithovirus_sibericum__1450746

Identity

Accession:: YP_009001211 ↗
Protein ID:: hypothetical_protein_pv_309
Kingdom:: euk

Quality

74.3 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Pithoviridae› Alphapithovirus› Pithovirus_sibericum

TaxID: 1450746

Cluster

View cluster (39 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 16-92

PDB

Domain cluster: rep: hypothetical_protein_pv_328__YP_009001230__Pithovirus_sibericum__1450746__D13-91

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1kblA05	1.20.80.30	Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein ›	0.64	53.0	5.11e-01	92.2%	96.6%
1s8nA02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.59	42.0	4.64e-01	76.6%	98.3%
3vygE00	1.10.472.20	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Nitrile hydratase, beta subunit	0.59	46.0	3.72e-01	85.7%	46.4%
7x4eA01	1.10.1220.160	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › DNA sulphur modification protein DndE	0.57	39.0	3.58e-01	72.7%	96.3%
2zm5A02	1.10.20.140	Mainly Alpha › Orthogonal Bundle › Histone, subunit A ›	0.56	36.0	3.76e-01	92.2%	70.8%
2p0wA03	1.10.10.390	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.52	30.0	3.46e-01	76.6%	77.8%
4g6dB02	6.10.140.1800	Special › Helix non-globular › Helix Hairpins ›	0.52	33.0	3.31e-01	83.1%	60.5%
2x1dA02	1.10.10.2120	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.51	36.0	3.64e-01	90.9%	75.7%
1fc6A01	3.30.750.44	Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA ›	0.51	39.0	3.62e-01	83.1%	67.3%
1sxjD03	1.20.272.10	Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 ›	0.51	40.0	3.87e-01	90.9%	76.9%
2p9xA00	1.10.1200.200	Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Protein of unknown function DUF3227	0.50	41.0	3.84e-01	92.2%	92.9%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5030514	103.12.1.0 ↗	alpha arrays › RuvA-C › ANTAR domain › ANTAR domain	0.63	40.0	4.63e-01	70.1%	100.0%
3960463	103.12.1.0 ↗	alpha arrays › RuvA-C › ANTAR domain › ANTAR domain	0.60	42.0	4.65e-01	76.6%	95.0%
5065464	103.7.1.1 ↗	alpha arrays › RuvA-C › Hypothetical protein MTH1615 › Hypothetical protein MTH1615 › dsDNA_bind	0.58	39.0	3.70e-01	71.4%	56.8%
198144	4953.1.1.2 ↗	beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ADSL_C	0.55	41.0	3.96e-01	79.2%	72.1%
4616072	103.1.1.83 ↗	alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › DUF2603	0.54	36.0	3.76e-01	74.0%	75.7%
3592099	108.1.1.0 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand	0.54	40.0	4.27e-01	88.3%	93.8%
3289310	103.12.1.1 ↗	alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › ANTAR	0.54	36.0	3.96e-01	72.7%	96.4%

D2 medium residues 93-202

PDB

D3 medium residues 225-319

PDB

Domain cluster: rep: hypothetical_protein_pv_308__YP_009001210__Pithovirus_sibericum__1450746__D229-313

D4 medium residues 320-431

PDB

Domain cluster: representative

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1dcqA02	1.25.40.20	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain	0.62	45.0	4.06e-01	86.6%	54.8%
4zhbA00	1.25.40.20	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain	0.62	42.0	4.34e-01	80.4%	74.0%
2zgdA00	1.25.40.20	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain	0.61	39.0	4.15e-01	79.5%	73.2%
2i2xB01	1.10.1240.10	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain	0.60	44.0	4.62e-01	76.8%	86.0%
7ru9C01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.58	41.0	3.15e-01	83.9%	30.7%
2ggfA00	1.25.40.180	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.57	47.0	4.44e-01	89.3%	75.9%
5dikA00	1.20.1290.10	Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like	0.57	49.0	5.00e-01	96.4%	99.1%
4me9B00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.56	40.0	3.44e-01	74.1%	53.8%
4ks9A01	1.20.140.90	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain	0.55	42.0	4.05e-01	81.2%	81.7%
1t98A02	1.20.58.590	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chromosome partition protein MukF, middle domain	0.54	41.0	3.64e-01	80.4%	83.4%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3536600	109.3.1.2 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2	0.57	42.0	3.74e-01	88.4%	53.8%
3746860	109.4.1.562 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CANIN	0.56	45.0	3.59e-01	87.5%	47.4%
3608548	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.56	46.0	3.44e-01	91.1%	93.2%
3462342	6155.1.1.0 ↗	alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter	0.54	41.0	3.89e-01	81.2%	85.6%
5027258	608.1.1.1 ↗	alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD	0.54	46.0	4.50e-01	94.6%	89.2%
4437203	109.3.1.8 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2	0.53	43.0	3.47e-01	87.5%	54.3%

D5 medium residues 432-500

PDB