←Back to structures

hypothetical_protein_pv_315

Euk-Vir

Pithovirus_sibericum

hypothetical_protein_pv_315__YP_009001217__Pithovirus_sibericum__1450746

Identity

Accession:: YP_009001217 ↗
Protein ID:: hypothetical_protein_pv_315
Kingdom:: euk

Quality

71.4 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Pithoviridae› Alphapithovirus› Pithovirus_sibericum

TaxID: 1450746

Cluster

View cluster (39 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 285-466

PDB

D2 medium residues 66-124

PDB

Domain cluster: rep: hypothetical_protein_pv_282__YP_009001184__Pithovirus_sibericum__1450746__D29-82

D3 medium residues 125-214

PDB

Domain cluster: representative

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2i2xB01	1.10.1240.10	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain	0.72	50.0	4.86e-01	72.2%	79.0%
1vkeB00	1.20.1290.10	Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like	0.69	52.0	5.06e-01	80.0%	79.2%
5dikA00	1.20.1290.10	Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like	0.68	51.0	4.79e-01	80.0%	75.0%
2zgdA00	1.25.40.20	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain	0.61	48.0	4.68e-01	82.2%	86.6%
2ii2A01	1.10.220.10	Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin	0.60	41.0	4.57e-01	71.1%	95.7%
4a64A02	1.20.1310.10	Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats	0.58	44.0	4.11e-01	81.1%	89.7%
3fnrA01	1.10.730.10	Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1	0.56	42.0	3.59e-01	78.9%	100.0%
3cskA02	3.30.540.30	Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 ›	0.53	37.0	3.16e-01	73.3%	90.1%
2qw6D00	1.20.272.10	Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 ›	0.53	44.0	4.54e-01	88.9%	100.0%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3684964	109.3.1.2 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2	0.64	53.0	4.35e-01	90.0%	63.0%
4014075	109.3.1.96 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4	0.62	51.0	3.83e-01	88.9%	43.9%
3723163	109.3.1.1 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank	0.62	46.0	4.10e-01	80.0%	65.4%
4313646	176.1.1.0 ↗	alpha arrays › Annexin › Annexin › Annexin	0.60	41.0	4.57e-01	71.1%	98.6%
1873306	176.1.1.1 ↗	alpha arrays › Annexin › Annexin › Annexin › Annexin	0.59	40.0	4.38e-01	70.0%	94.4%
3473245	109.3.1.163 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_4, Ank_5	0.58	49.0	3.97e-01	93.3%	72.8%
3260716	109.3.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat	0.56	46.0	3.98e-01	92.2%	84.7%
2738746	148.1.3.24 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_7	0.54	40.0	4.03e-01	80.0%	79.8%

D4 medium residues 215-284

PDB

Domain cluster: representative

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2ra1A03	1.20.58.770	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.65	44.0	4.56e-01	70.0%	98.4%
2nogB02	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.63	43.0	4.32e-01	70.0%	98.6%
3eslA02	1.25.40.930	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.63	52.0	4.52e-01	97.1%	69.7%
3t5vA00	1.25.40.990	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.62	46.0	3.12e-01	82.9%	47.5%
7ccmB01	1.10.437.10	Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like	0.60	44.0	3.60e-01	81.4%	58.7%
4wqoD00	1.20.1310.10	Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats	0.59	49.0	4.02e-01	97.1%	86.5%
3cbuA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.59	49.0	4.12e-01	98.6%	90.3%
5fhiA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.56	46.0	3.78e-01	94.3%	82.7%
5hayA02	1.25.40.440	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Nucleoporin, helical domain, central subdomain	0.54	43.0	4.21e-01	94.3%	96.2%
3r2qA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.53	44.0	3.83e-01	95.7%	85.8%
4gytA00	1.20.120.740	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YgfB uncharacterised protein family PF03695	0.51	39.0	3.02e-01	87.1%	75.1%
2i6jA00	3.90.190.10	Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily	0.50	41.0	3.25e-01	95.7%	72.0%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3590183	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.68	56.0	4.82e-01	95.7%	63.3%
3924177	109.4.1.1157 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_WDR11	0.65	55.0	3.82e-01	100.0%	32.5%
3257030	109.4.1.1264 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_16	0.59	49.0	3.01e-01	100.0%	16.7%
3824654	109.1.1.6 ↗	alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C_2	0.58	46.0	3.85e-01	91.4%	74.1%