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hypothetical_protein_pv_320
Euk-VirPithovirus_sibericum
hypothetical_protein_pv_320__YP_009001222__Pithovirus_sibericum__1450746
Identity
- Accession:
- YP_009001222 ↗
- Protein ID:
- hypothetical_protein_pv_320
- Kingdom:
- euk
Quality
73.0
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Pithoviridae›
Alphapithovirus›
Pithovirus_sibericum
TaxID: 1450746
Cluster
View cluster (39 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-90
Domain cluster:
rep: hypothetical_protein_pv_328__YP_009001230__Pithovirus_sibericum__1450746__D13-91
D2
medium
residues 91-183
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1qi9A00 | 1.10.606.10 | Mainly Alpha › Orthogonal Bundle › Vanadium-containing Chloroperoxidase; domain 2 › Vanadium-containing Chloroperoxidase, domain 2 | 0.59 | 50.0 | 3.14e-01 | 97.8% | 58.4% |
| 1b9mB02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.58 | 29.0 | 3.27e-01 | 84.9% | 59.7% |
| 3i07B01 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.58 | 27.0 | 3.47e-01 | 96.8% | 78.4% |
| 7kb2B01 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.55 | 47.0 | 3.89e-01 | 96.8% | 68.4% |
| 5z2mB00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.54 | 46.0 | 4.15e-01 | 97.8% | 81.0% |
| 2i2lA01 | 2.10.70.50 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.53 | 29.0 | 3.70e-01 | 83.9% | 96.2% |
| 4ns4A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 45.0 | 3.31e-01 | 98.9% | 83.4% |
| 4nozB01 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.51 | 26.0 | 3.05e-01 | 98.9% | 72.2% |
| 2v6yA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.50 | 34.0 | 3.74e-01 | 73.1% | 86.7% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3931157 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.72 | 36.0 | 4.21e-01 | 90.3% | 67.7% |
| 5072409 | 873.1.1.1 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R | 0.64 | 50.0 | 4.04e-01 | 83.9% | 95.6% |
| 3996644 | 330.1.1.24 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Paxt-1_C | 0.63 | 33.0 | 3.30e-01 | 94.6% | 45.0% |
| 3428771 | 109.3.1.165 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_4, Ank_5 | 0.60 | 54.0 | 3.91e-01 | 98.9% | 45.0% |
| 3928250 | 109.18.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins | 0.59 | 50.0 | 3.47e-01 | 96.8% | 42.9% |
| 4975452 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.59 | 45.0 | 4.27e-01 | 82.8% | 98.3% |
| 3801966 | 252.1.1.2 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › DUF7028 | 0.58 | 38.0 | 4.14e-01 | 79.6% | 81.3% |
| 3209694 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.57 | 41.0 | 4.00e-01 | 100.0% | 69.0% |
| None | — | 0.56 | 49.0 | 3.53e-01 | 100.0% | 63.7% | |
| 3361198 | 109.3.1.188 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › PF28568 | 0.56 | 50.0 | 4.14e-01 | 98.9% | 89.1% |
| 4999609 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.56 | 41.0 | 3.00e-01 | 79.6% | 38.6% |
| 5046861 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.56 | 41.0 | 3.47e-01 | 78.5% | 69.9% |
| 4971307 | 873.1.1.13 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › ATC_hydrolase | 0.55 | 41.0 | 3.58e-01 | 80.6% | 89.6% |
| 3783912 | 59.1.1.6 ↗ | beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › TFIIIC_sub6 | 0.55 | 27.0 | 3.00e-01 | 84.9% | 56.8% |
| 3604147 | 873.1.1.9 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R,DUF2507 | 0.55 | 45.0 | 3.98e-01 | 91.4% | 99.3% |
| 5049994 | 243.6.1.4 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA | 0.53 | 31.0 | 3.39e-01 | 83.9% | 70.7% |
| 4927916 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 33.0 | 3.90e-01 | 95.7% | 95.2% |
| 169882 | 10.1.1.32 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Sial-lect-inser | 0.52 | 45.0 | 3.59e-01 | 96.8% | 65.1% |
| 3597617 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.52 | 44.0 | 3.25e-01 | 98.9% | 47.9% |
| 4959359 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 29.0 | 2.70e-01 | 86.0% | 41.7% |
| 5056824 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.51 | 43.0 | 3.39e-01 | 100.0% | 51.3% |
| 3716952 | 2007.2.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II | 0.51 | 41.0 | 2.79e-01 | 92.5% | 60.3% |
| 3461521 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.50 | 31.0 | 2.91e-01 | 96.8% | 48.7% |
D3
medium
residues 184-305
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1e5rB02 | 1.10.1720.10 | Mainly Alpha › Orthogonal Bundle › Proline Oxidase; Chain: A, Domain 2 › L-proline 3-hydroxylase, C-terminal domain | 0.61 | 39.0 | 4.47e-01 | 83.6% | 91.7% |
| 1vkeB00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.57 | 38.0 | 4.12e-01 | 84.4% | 82.2% |
| 1hxiA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.57 | 40.0 | 4.21e-01 | 97.5% | 81.2% |
| 3ajcA01 | 1.10.220.30 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Flagellar motor switch protein FliG, alpha-alpha superhelical domain | 0.55 | 41.0 | 4.38e-01 | 95.9% | 92.3% |
| 5lo9A01 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.55 | 30.0 | 3.50e-01 | 80.3% | 74.4% |
| 3zilA00 | 1.25.10.60 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Rad61, Wapl domain | 0.54 | 49.0 | 3.50e-01 | 100.0% | 42.8% |
| 3t8vA05 | 1.25.50.10 | Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain | 0.54 | 48.0 | 3.54e-01 | 100.0% | 41.0% |
| 2bb5A01 | 1.50.10.20 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.54 | 48.0 | 3.62e-01 | 98.4% | 51.7% |
| 4g9qA00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.53 | 45.0 | 3.66e-01 | 94.3% | 67.2% |
| 5c8aA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.52 | 33.0 | 3.90e-01 | 70.5% | 100.0% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4018298 | 109.4.1.761 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Telomere_reg-2 | 0.60 | 55.0 | 3.81e-01 | 100.0% | 75.0% |
| 3173393 | 109.4.1.1311 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_EZ | 0.58 | 52.0 | 3.13e-01 | 100.0% | 16.3% |
| 4016857 | 109.4.1.109 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sel1 | 0.55 | 42.0 | 3.71e-01 | 98.4% | 53.5% |
| 5031614 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 47.0 | 4.65e-01 | 96.7% | 89.2% |
| 4021846 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.54 | 41.0 | 3.28e-01 | 79.5% | 73.1% |
| 3478957 | 195.1.1.0 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like | 0.53 | 37.0 | 3.58e-01 | 71.3% | 95.0% |
| 3436109 | 109.4.1.1668 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27696 | 0.53 | 44.0 | 3.19e-01 | 90.2% | 63.5% |
| 4025889 | 101.1.2.122 ↗ | alpha arrays › HTH › HTH › winged helix domain › CSN8_PSD8_EIF3K | 0.50 | 44.0 | 3.35e-01 | 98.4% | 50.7% |
D4
medium
residues 306-423
D5
medium
residues 424-479