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hypothetical_protein_pv_328
Euk-VirPithovirus_sibericum
hypothetical_protein_pv_328__YP_009001230__Pithovirus_sibericum__1450746
Identity
- Accession:
- YP_009001230 ↗
- Protein ID:
- hypothetical_protein_pv_328
- Kingdom:
- euk
Quality
73.3
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Pithoviridae›
Alphapithovirus›
Pithovirus_sibericum
TaxID: 1450746
Cluster
View cluster (39 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-91
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7eebI01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.61 | 49.0 | 3.86e-01 | 87.3% | 51.5% |
| 4fcyA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.58 | 37.0 | 3.74e-01 | 89.9% | 64.1% |
| 7s0rB01 | 1.20.81.20 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › | 0.58 | 33.0 | 3.42e-01 | 82.3% | 57.9% |
| 1wa8A00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.58 | 37.0 | 3.43e-01 | 82.3% | 51.5% |
| 2zm5A02 | 1.10.20.140 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › | 0.55 | 35.0 | 3.65e-01 | 72.2% | 69.4% |
| 2x1dA02 | 1.10.10.2120 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.54 | 35.0 | 3.67e-01 | 72.2% | 71.6% |
| 1d2zA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.54 | 42.0 | 3.91e-01 | 84.8% | 69.6% |
| 2ze7A02 | 1.10.287.890 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain | 0.52 | 39.0 | 3.64e-01 | 81.0% | 82.4% |
| 4nb5B02 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.51 | 35.0 | 3.86e-01 | 82.3% | 89.1% |
| 3mklA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.50 | 34.0 | 3.20e-01 | 97.5% | 53.8% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3821913 | 145.1.1.1 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box | 0.72 | 50.0 | 5.02e-01 | 72.2% | 80.0% |
| 3592099 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.65 | 47.0 | 5.14e-01 | 77.2% | 100.0% |
| 4514016 | 4095.1.1.1 ↗ | alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N | 0.63 | 43.0 | 4.03e-01 | 70.9% | 97.0% |
| 4332288 | 4095.1.1.1 ↗ | alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N | 0.63 | 45.0 | 4.01e-01 | 73.4% | 92.7% |
| 5054609 | 4095.1.1.1 ↗ | alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N | 0.63 | 43.0 | 3.97e-01 | 72.2% | 96.2% |
| 5031544 | 4095.1.1.0 ↗ | alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain | 0.63 | 43.0 | 4.00e-01 | 70.9% | 95.0% |
| 4177727 | 4095.1.1.1 ↗ | alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N | 0.63 | 44.0 | 3.95e-01 | 73.4% | 90.9% |
| 4481172 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.61 | 54.0 | 3.54e-01 | 100.0% | 45.2% |
| 2627770 | 101.1.4.1 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Pou | 0.61 | 40.0 | 4.34e-01 | 81.0% | 79.4% |
| 3178032 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.57 | 44.0 | 4.63e-01 | 88.6% | 95.7% |
| 4114693 | 5041.1.1.28 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › PF26135 | 0.57 | 33.0 | 3.53e-01 | 79.7% | 65.7% |
| 3293154 | 101.1.2.472 ↗ | alpha arrays › HTH › HTH › winged helix domain › A_thal_3526 | 0.57 | 39.0 | 4.36e-01 | 96.2% | 95.0% |
| 3287448 | 2003.1.5.46 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS | 0.56 | 40.0 | 2.80e-01 | 74.7% | 67.3% |
| 3334461 | 101.1.1.270 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › A_thal_3526 | 0.56 | 38.0 | 3.97e-01 | 96.2% | 76.0% |
| 3955500 | 101.1.2.655 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF732 | 0.55 | 38.0 | 3.88e-01 | 97.5% | 74.4% |
| 4298859 | 321.1.1.7 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GCS2 | 0.55 | 46.0 | 3.04e-01 | 97.5% | 88.8% |
| 3312794 | 101.1.3.22 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › A_thal_3526 | 0.54 | 37.0 | 3.77e-01 | 94.9% | 74.7% |
| 3786967 | 604.13.1.0 ↗ | alpha bundles › Spectrin repeat-like › USP8 N-terminal domain-like › USP8 N-terminal domain-like | 0.53 | 39.0 | 3.62e-01 | 81.0% | 92.4% |
| 3829115 | 101.1.1.270 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › A_thal_3526 | 0.52 | 36.0 | 3.84e-01 | 100.0% | 87.7% |
| 3950788 | 7579.1.1.10 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Thioesterase | 0.51 | 45.0 | 3.19e-01 | 100.0% | 81.5% |
| 5045531 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.51 | 42.0 | 4.13e-01 | 100.0% | 84.7% |
| 3255454 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.50 | 38.0 | 3.18e-01 | 84.8% | 74.2% |
D2
high
residues 96-177
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2yvyA01 | 1.25.60.10 | Mainly Alpha › Alpha Horseshoe › MgtE N-terminal fold › MgtE N-terminal domain-like | 0.56 | 45.0 | 3.95e-01 | 89.0% | 76.8% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3733315 | 109.3.1.166 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3 | 0.55 | 46.0 | 3.49e-01 | 100.0% | 38.7% |
| 3300070 | 109.3.1.96 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 | 0.55 | 46.0 | 3.41e-01 | 98.8% | 39.6% |
D3
medium
residues 202-353
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4uucA00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.70 | 64.0 | 5.62e-01 | 100.0% | 97.3% |
| 6if3A00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.67 | 49.0 | 4.83e-01 | 75.0% | 79.9% |
| 5z96A01 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.62 | 55.0 | 4.77e-01 | 100.0% | 94.2% |
| 4bwrA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.58 | 51.0 | 3.70e-01 | 100.0% | 42.2% |
| 3t5vA00 | 1.25.40.990 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.54 | 47.0 | 3.84e-01 | 96.7% | 81.9% |
| 6u3wB00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.54 | 47.0 | 3.87e-01 | 97.4% | 55.7% |
| 1wx0A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.52 | 37.0 | 3.30e-01 | 73.0% | 55.5% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3275803 | 109.3.1.96 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 | 0.72 | 67.0 | 4.85e-01 | 100.0% | 57.8% |
| 3255754 | 109.3.1.8 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2 | 0.72 | 65.0 | 4.70e-01 | 99.3% | 51.8% |
| 3198211 | 109.3.1.347 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_KRIT1 | 0.70 | 52.0 | 3.90e-01 | 77.0% | 45.3% |
| 3247851 | 109.3.1.33 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2,Ank_3 | 0.70 | 59.0 | 5.81e-01 | 90.1% | 98.8% |
| 3267273 | 109.3.1.8 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2 | 0.70 | 50.0 | 5.64e-01 | 76.3% | 97.4% |
| 3272965 | 109.3.1.8 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2 | 0.70 | 46.0 | 5.37e-01 | 72.4% | 96.2% |
| 4306725 | 109.3.1.20 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2,Ank_4 | 0.69 | 63.0 | 5.30e-01 | 100.0% | 77.7% |
| 4042478 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.69 | 63.0 | 4.32e-01 | 100.0% | 44.8% |
| 3929912 | 109.3.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 | 0.69 | 62.0 | 5.58e-01 | 97.4% | 100.0% |
| 3259554 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.68 | 62.0 | 5.41e-01 | 99.3% | 95.7% |
| 3267275 | 109.3.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 | 0.68 | 62.0 | 5.86e-01 | 100.0% | 98.4% |
| 3259472 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.67 | 50.0 | 5.49e-01 | 77.0% | 99.2% |
| 3822465 | 109.4.1.1257 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2 | 0.65 | 56.0 | 5.48e-01 | 94.7% | 98.2% |
| 3640451 | 109.16.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › TROVE domain-like › TROVE domain-like › DUF2828 | 0.65 | 52.0 | 3.98e-01 | 85.5% | 67.7% |
| 3332416 | 109.4.1.1293 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1 | 0.65 | 59.0 | 5.14e-01 | 100.0% | 90.6% |
| 3329843 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.64 | 55.0 | 4.64e-01 | 93.4% | 60.0% |
| 3612355 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.63 | 57.0 | 3.91e-01 | 100.0% | 49.5% |
| 3695738 | 109.3.1.232 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_4, Ank_KRIT1 | 0.63 | 55.0 | 4.05e-01 | 95.4% | 37.8% |
| 3733315 | 109.3.1.166 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3 | 0.62 | 55.0 | 5.11e-01 | 96.7% | 91.8% |
| 3332480 | 109.4.1.1254 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif | 0.62 | 56.0 | 4.48e-01 | 100.0% | 65.2% |
| 3684540 | 109.4.1.1257 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2 | 0.62 | 55.0 | 4.92e-01 | 98.0% | 82.3% |
| 3350365 | 109.4.1.1254 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif | 0.61 | 54.0 | 4.01e-01 | 99.3% | 40.2% |
| 3543542 | 109.4.1.72 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps16_C | 0.60 | 49.0 | 5.12e-01 | 95.4% | 95.7% |
| 3705620 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.60 | 53.0 | 4.76e-01 | 100.0% | 83.1% |
| 3298425 | 109.4.1.1274 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, PPR_long | 0.60 | 53.0 | 3.75e-01 | 100.0% | 47.6% |
| 3454887 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.59 | 54.0 | 4.26e-01 | 100.0% | 63.5% |
| 3276358 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.59 | 53.0 | 3.94e-01 | 100.0% | 49.0% |
| 3830461 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.59 | 52.0 | 3.76e-01 | 99.3% | 41.0% |
| 3821635 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.59 | 52.0 | 4.42e-01 | 100.0% | 74.7% |
| 3375267 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.58 | 51.0 | 4.70e-01 | 99.3% | 79.5% |
| 3645625 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.58 | 52.0 | 4.58e-01 | 100.0% | 86.5% |
| 3469629 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.57 | 51.0 | 4.65e-01 | 100.0% | 81.5% |
| 3356411 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.57 | 50.0 | 4.78e-01 | 100.0% | 88.1% |
| 3353090 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.57 | 49.0 | 4.89e-01 | 96.7% | 96.9% |
| 3832503 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.57 | 50.0 | 4.69e-01 | 100.0% | 84.6% |
| 3781941 | 109.4.1.43 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SAC3_GANP | 0.56 | 41.0 | 3.68e-01 | 75.7% | 71.2% |
| 3469557 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.56 | 46.0 | 4.25e-01 | 90.1% | 82.5% |
| 3320289 | 109.4.1.189 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 | 0.55 | 39.0 | 4.32e-01 | 73.7% | 100.0% |
| 3384833 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.54 | 47.0 | 4.54e-01 | 96.7% | 90.9% |
| 3408275 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 44.0 | 3.86e-01 | 88.8% | 91.7% |
| 3585502 | 109.4.1.72 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps16_C | 0.53 | 47.0 | 3.48e-01 | 99.3% | 52.7% |
| 3491539 | 109.54.1.4 ↗ | alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › UTP15_C | 0.50 | 43.0 | 3.98e-01 | 92.8% | 83.2% |