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hypothetical_protein_pv_346

Euk-Vir

Pithovirus_sibericum

hypothetical_protein_pv_346__YP_009001248__Pithovirus_sibericum__1450746

Identity

Accession:
YP_009001248 ↗
Protein ID:
hypothetical_protein_pv_346
Kingdom:
euk

Quality

65.2 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Pithoviridae› Alphapithovirus› Pithovirus_sibericum

TaxID: 1450746

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-90
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1cpyA02 1.10.287.410 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 40.0 4.35e-01 100.0% 79.2%
2au5A00 1.20.120.590 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › EF2947-like 0.62 49.0 4.33e-01 85.4% 83.7%
2x48A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 34.0 4.18e-01 94.4% 88.9%
5undA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.60 24.0 2.93e-01 76.4% 51.9%
3sooA01 3.30.250.20 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › L1 transposable element, C-terminal domain 0.59 28.0 3.14e-01 100.0% 55.1%
1v4gA01 6.10.140.800 Special › Helix non-globular › Helix Hairpins › 0.58 34.0 3.81e-01 98.9% 75.4%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.57 35.0 4.05e-01 97.8% 90.2%
7vkcA01 1.10.1070.20 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › 0.56 38.0 3.15e-01 70.8% 77.0%
4zudA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.53 42.0 3.11e-01 87.6% 82.8%
2wpvE00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 41.0 3.01e-01 89.9% 40.4%
4xhpA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 37.0 3.12e-01 79.8% 58.6%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3299249 6166.1.1.1 ↗ alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › ERG4_ERG24 0.56 38.0 2.97e-01 70.8% 75.7%
3229807 822.1.1.0 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain 0.56 40.0 4.21e-01 100.0% 85.0%
3220364 6166.1.1.1 ↗ alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › ERG4_ERG24 0.54 37.0 2.93e-01 70.8% 75.5%
3275606 192.1.1.0 ↗ alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain 0.54 43.0 3.99e-01 88.8% 90.0%
5053378 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.53 42.0 3.63e-01 86.5% 62.1%
4961283 101.1.2.935 ↗ alpha arrays › HTH › HTH › winged helix domain › HVO_B0008_C 0.53 45.0 4.27e-01 96.6% 96.3%
3542513 386.1.1.286 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf_ZIC, zf-C2H2_15 0.52 33.0 3.83e-01 93.3% 93.3%
3631193 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.51 45.0 3.26e-01 96.6% 51.0%
D2 medium residues 99-162
PDB