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hypothetical_protein_pv_352

Euk-Vir

Pithovirus_sibericum

hypothetical_protein_pv_352__YP_009001254__Pithovirus_sibericum__1450746

Identity

Accession:
YP_009001254 ↗
Protein ID:
hypothetical_protein_pv_352
Kingdom:
euk

Quality

55.6 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Pithoviridae› Alphapithovirus› Pithovirus_sibericum

TaxID: 1450746

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 370-472
PDB
Domain cluster: rep: MG250486.1__AUE23446.1__Ro1_00241__00220__D1-98
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14216.13 best DUF4326 74.4 1.20e-20 95.2% 97.7%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2b3wA00 1.10.357.40 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › YbiA-like 0.63 51.0 4.32e-01 87.4% 87.5%
4n01A02 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.54 38.0 3.29e-01 75.7% 76.4%
4w9rA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 31.0 3.27e-01 77.7% 61.7%
5ailA00 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.53 46.0 3.94e-01 100.0% 76.1%
1d2kA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.52 43.0 3.14e-01 96.1% 82.7%
1gtvA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 43.0 3.51e-01 97.1% 62.5%
6feaB01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.51 42.0 3.86e-01 96.1% 74.7%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3432841 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.66 53.0 4.54e-01 85.4% 98.8%
3705063 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.64 50.0 4.50e-01 84.5% 100.0%
7671 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.63 51.0 4.38e-01 87.4% 90.0%
3600506 4308.1.1.0 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like 0.63 50.0 4.43e-01 86.4% 98.0%
3218293 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.62 52.0 4.07e-01 89.3% 72.3%
3797441 4308.1.1.0 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like 0.62 51.0 4.51e-01 89.3% 97.4%
3616731 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.62 51.0 4.46e-01 89.3% 94.3%
3616804 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.61 56.0 4.56e-01 100.0% 98.4%
3999783 4308.1.1.0 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like 0.61 56.0 4.41e-01 100.0% 98.1%
3923757 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.58 53.0 4.48e-01 99.0% 100.0%
3515138 4308.1.1.0 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like 0.58 52.0 4.22e-01 98.1% 100.0%
3281506 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.58 52.0 4.61e-01 100.0% 98.7%
3800544 4308.1.1.0 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like 0.57 52.0 4.11e-01 100.0% 94.6%
2050576 2007.1.14.5 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Peripla_BP_2 0.54 38.0 3.50e-01 75.7% 93.8%
3782090 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.51 39.0 3.68e-01 85.4% 71.9%
D2 medium residues 100-298
PDB