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hypothetical_protein_pv_356
Euk-VirPithovirus_sibericum
hypothetical_protein_pv_356__YP_009001258__Pithovirus_sibericum__1450746
Identity
- Accession:
- YP_009001258 ↗
- Protein ID:
- hypothetical_protein_pv_356
- Kingdom:
- euk
Quality
73.5
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Pithoviridae›
Alphapithovirus›
Pithovirus_sibericum
TaxID: 1450746
Cluster
View cluster (39 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-114
Domain cluster:
rep: hypothetical_protein_pv_69__YP_009000971__Pithovirus_sibericum__1450746__D3-123
D2
medium
residues 115-206
D3
medium
residues 207-357
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ajaA00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.68 | 63.0 | 4.80e-01 | 100.0% | 60.6% |
| 2bnxB01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.68 | 51.0 | 4.36e-01 | 77.5% | 75.8% |
| 5dllA05 | 1.25.50.10 | Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain | 0.65 | 59.0 | 4.63e-01 | 100.0% | 57.9% |
| 7ep1B01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.65 | 58.0 | 5.00e-01 | 99.3% | 95.9% |
| 2dznA00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.63 | 57.0 | 5.02e-01 | 100.0% | 75.2% |
| 7xceA01 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.63 | 57.0 | 4.82e-01 | 98.0% | 81.6% |
| 4uucA00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.62 | 56.0 | 4.97e-01 | 100.0% | 87.8% |
| 5dn7A00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.60 | 54.0 | 4.66e-01 | 99.3% | 79.6% |
| 3twqA00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.60 | 52.0 | 5.13e-01 | 96.0% | 87.2% |
| 4g3aB00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.60 | 53.0 | 4.58e-01 | 96.7% | 82.5% |
| 4flbA00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.60 | 48.0 | 5.16e-01 | 86.8% | 100.0% |
| 3ibvB00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.59 | 54.0 | 3.33e-01 | 100.0% | 24.6% |
| 2diwA01 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.59 | 48.0 | 4.95e-01 | 87.4% | 100.0% |
| 2vyiA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.58 | 44.0 | 4.68e-01 | 87.4% | 93.0% |
| 4jxtA00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.58 | 47.0 | 5.00e-01 | 90.7% | 100.0% |
| 4besA02 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.57 | 44.0 | 4.69e-01 | 80.8% | 96.2% |
| 1h2uA01 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.57 | 48.0 | 4.04e-01 | 91.4% | 98.5% |
| 1a17A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 42.0 | 4.17e-01 | 87.4% | 74.8% |
| 2e2eA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 46.0 | 4.65e-01 | 96.0% | 90.1% |
| 6fdpA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.55 | 41.0 | 4.48e-01 | 86.1% | 98.3% |
| 2lniA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.55 | 42.0 | 4.42e-01 | 86.1% | 91.0% |
| 3fp3A01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.53 | 40.0 | 4.22e-01 | 92.1% | 88.9% |
| 5l0wB01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.53 | 42.0 | 4.35e-01 | 86.8% | 93.5% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3998266 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.71 | 51.0 | 5.26e-01 | 74.2% | 93.1% |
| 3244428 | 109.4.1.170 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CLASP_N | 0.71 | 54.0 | 3.26e-01 | 78.8% | 16.3% |
| 4532 | 109.18.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins | 0.68 | 63.0 | 4.80e-01 | 100.0% | 60.8% |
| 3186674 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.68 | 60.0 | 6.08e-01 | 94.7% | 96.0% |
| 3701060 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.66 | 58.0 | 4.10e-01 | 97.4% | 45.8% |
| 3382276 | 109.4.1.1261 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_long | 0.65 | 58.0 | 4.70e-01 | 98.7% | 59.0% |
| 4017980 | 109.3.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 | 0.65 | 59.0 | 5.62e-01 | 99.3% | 85.1% |
| 3712569 | 109.4.1.1255 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 | 0.65 | 53.0 | 3.82e-01 | 87.4% | 66.0% |
| 3609584 | 109.4.1.299 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Ltn1_1st | 0.64 | 57.0 | 4.41e-01 | 96.7% | 53.3% |
| 3252121 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.64 | 57.0 | 5.26e-01 | 96.7% | 90.0% |
| 3616524 | 109.3.1.96 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 | 0.63 | 57.0 | 5.27e-01 | 99.3% | 83.6% |
| 3214835 | 109.4.1.1772 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, CLASP_N | 0.62 | 53.0 | 3.32e-01 | 94.7% | 29.1% |
| 4605077 | 109.4.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm | 0.61 | 53.0 | 4.07e-01 | 97.4% | 55.1% |
| 4331806 | 109.4.1.70 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID | 0.61 | 42.0 | 4.37e-01 | 70.9% | 91.4% |
| 3802014 | 109.4.1.266 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › XMAP215_CLASP_TOG | 0.60 | 55.0 | 4.72e-01 | 100.0% | 79.2% |
| 3569186 | 109.4.1.85 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nop52 | 0.60 | 53.0 | 4.43e-01 | 96.0% | 78.1% |
| 4517212 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 53.0 | 4.34e-01 | 96.7% | 78.2% |
| 3896393 | 109.4.1.1583 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30993 | 0.59 | 48.0 | 4.11e-01 | 88.1% | 54.1% |
| 3578688 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 51.0 | 4.31e-01 | 96.7% | 85.4% |
| 3420828 | 109.4.1.1282 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, TPR_24 | 0.58 | 52.0 | 4.24e-01 | 100.0% | 54.6% |
| 3391405 | 109.4.1.1390 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF31234 | 0.56 | 46.0 | 4.24e-01 | 88.7% | 83.6% |
| 3354769 | 109.4.1.1254 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif | 0.56 | 50.0 | 4.56e-01 | 100.0% | 76.1% |
| 5016158 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 46.0 | 4.81e-01 | 94.0% | 99.3% |
| 3738174 | 109.4.1.210 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 | 0.54 | 46.0 | 4.38e-01 | 94.0% | 82.8% |
| 3922888 | 109.4.1.889 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_Syf1_M | 0.54 | 49.0 | 4.41e-01 | 99.3% | 83.4% |
| 3883605 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 47.0 | 4.03e-01 | 99.3% | 71.9% |
| 4944315 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 41.0 | 4.05e-01 | 84.8% | 77.5% |
| 3744556 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 45.0 | 4.18e-01 | 94.0% | 90.3% |
| 3606884 | 109.4.1.1952 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19, PF30475 | 0.52 | 43.0 | 4.39e-01 | 94.7% | 92.7% |
| 3514165 | 226.1.1.0 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain | 0.51 | 44.0 | 4.07e-01 | 94.7% | 88.4% |
D4
medium
residues 358-440
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1mqsA04 | 1.25.40.60 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.64 | 56.0 | 5.24e-01 | 100.0% | 98.1% |
| 3sqiA01 | 1.10.150.540 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.64 | 50.0 | 4.76e-01 | 85.5% | 78.8% |
| 1c02A00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.59 | 40.0 | 3.22e-01 | 71.1% | 37.3% |
| 3sp1A02 | 1.20.120.1910 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cysteine-tRNA ligase, C-terminal anti-codon recognition domain | 0.58 | 41.0 | 3.43e-01 | 74.7% | 41.7% |
| 3cqcB01 | 1.20.58.1380 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 44.0 | 4.32e-01 | 95.2% | 78.9% |
| 2wvlB00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.56 | 45.0 | 2.97e-01 | 88.0% | 41.4% |
| 7qx4A01 | 1.20.190.10 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain | 0.56 | 46.0 | 3.34e-01 | 89.2% | 41.9% |
| 2qw6D00 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.56 | 42.0 | 4.22e-01 | 85.5% | 80.2% |
| 1yo7A00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.55 | 37.0 | 3.33e-01 | 71.1% | 68.3% |
| 4q5qA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.53 | 40.0 | 3.73e-01 | 80.7% | 82.9% |
| 4ie5A02 | 1.20.58.1470 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › FTO C-terminal domain | 0.53 | 44.0 | 3.82e-01 | 95.2% | 92.5% |
| 1n81A00 | 1.10.3030.10 | Mainly Alpha › Orthogonal Bundle › Gametocyte protein Pfg27 › Gametocyte protein Pfg27 | 0.53 | 43.0 | 3.34e-01 | 90.4% | 90.3% |
| 4me9B00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 43.0 | 3.41e-01 | 95.2% | 66.1% |
| 5jj6B01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.52 | 40.0 | 3.91e-01 | 90.4% | 75.0% |
| 2fefA01 | 1.20.1440.70 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › PA2201 N-terminal domain-like | 0.51 | 37.0 | 3.24e-01 | 75.9% | 66.4% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5027884 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.67 | 60.0 | 3.77e-01 | 100.0% | 82.4% |
| 3899910 | 109.4.1.557 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TTC7_N | 0.63 | 50.0 | 4.22e-01 | 91.6% | 52.6% |
| 3231843 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.62 | 42.0 | 4.39e-01 | 100.0% | 78.7% |
| 3896752 | 632.3.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain | 0.61 | 34.0 | 3.82e-01 | 92.8% | 71.7% |
| 5073105 | 141.1.1.3 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › UbiA | 0.59 | 52.0 | 3.57e-01 | 100.0% | 52.2% |
| 4034377 | 4982.1.1.2 ↗ | alpha arrays › KaiA/RbsU domain-like › KaiA/RbsU domain › KaiA/RbsU domain › RsbU_N | 0.56 | 38.0 | 3.79e-01 | 72.3% | 83.3% |
| 3869091 | 109.4.1.668 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cse1 | 0.56 | 45.0 | 3.33e-01 | 96.4% | 45.9% |
| 5051835 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 47.0 | 3.18e-01 | 95.2% | 61.8% |
| 3752055 | 109.4.1.98 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 45.0 | 4.23e-01 | 94.0% | 74.3% |
| 3257392 | 603.1.1.3 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › V-SNARE | 0.53 | 43.0 | 3.52e-01 | 92.8% | 89.1% |
| 3966574 | 633.9.1.1 ↗ | alpha bundles › Bromodomain-like › PA2201 N-terminal domain-like › PA2201 N-terminal domain-like › PA2201_N | 0.51 | 37.0 | 3.26e-01 | 75.9% | 66.4% |
| 54285 | 633.9.1.0 ↗ | alpha bundles › Bromodomain-like › PA2201 N-terminal domain-like › PA2201 N-terminal domain-like | 0.51 | 37.0 | 3.25e-01 | 75.9% | 66.9% |