←Back to structures

hypothetical_protein_pv_359

Euk-Vir

Pithovirus_sibericum

hypothetical_protein_pv_359__YP_009001261__Pithovirus_sibericum__1450746

Identity

Accession:
YP_009001261 ↗
Protein ID:
hypothetical_protein_pv_359
Kingdom:
euk

Quality

73.4 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Pithoviridae› Alphapithovirus› Pithovirus_sibericum

TaxID: 1450746

Cluster

View cluster (39 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-107
PDB
Domain cluster: rep: hypothetical_protein_pv_69__YP_009000971__Pithovirus_sibericum__1450746__D3-123
D2 medium residues 147-176_189-232
PDB
D3 medium residues 233-333
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vkeB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.75 53.0 5.38e-01 73.3% 85.1%
2ajaA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.68 60.0 4.18e-01 99.0% 43.7%
1wdyA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.64 57.0 4.14e-01 98.0% 36.5%
4uucA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.63 54.0 4.24e-01 96.0% 45.2%
4leuA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.62 53.0 4.42e-01 95.0% 58.8%
3beyD00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.61 44.0 4.56e-01 96.0% 79.8%
3deoA02 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.60 54.0 4.78e-01 99.0% 78.8%
8gpsA01 1.25.60.10 Mainly Alpha › Alpha Horseshoe › MgtE N-terminal fold › MgtE N-terminal domain-like 0.56 46.0 4.59e-01 92.1% 89.5%
4lctB00 1.25.40.570 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 45.0 3.28e-01 100.0% 60.1%
1cpcB00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.53 39.0 3.28e-01 77.2% 76.7%
1sm7A00 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.52 35.0 3.50e-01 70.3% 90.8%
4epzA00 1.25.40.810 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › UpxZ 0.52 41.0 3.63e-01 87.1% 68.8%
6hftA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 41.0 3.92e-01 92.1% 79.5%
4kvmA02 1.25.40.1010 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.51 41.0 3.31e-01 91.1% 95.4%
2lseA00 1.20.120.1360 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.51 36.0 3.66e-01 75.2% 85.1%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3248929 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.72 64.0 5.17e-01 96.0% 67.6%
3445962 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.70 58.0 5.67e-01 88.1% 92.7%
3805826 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.69 61.0 5.69e-01 96.0% 88.8%
3458101 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.67 57.0 3.86e-01 92.1% 43.0%
3733564 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.66 54.0 5.28e-01 92.1% 80.9%
3382990 109.3.1.188 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › PF28568 0.66 57.0 4.15e-01 96.0% 63.1%
3257493 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.66 58.0 4.44e-01 99.0% 49.0%
3203926 109.3.1.164 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_4 0.66 57.0 4.07e-01 96.0% 33.2%
3259471 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.66 58.0 5.04e-01 99.0% 71.2%
3733764 109.3.1.164 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_4 0.65 58.0 3.64e-01 97.0% 19.0%
4011282 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.63 55.0 4.25e-01 96.0% 43.0%
3630216 109.3.1.162 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 0.63 54.0 4.42e-01 95.0% 53.2%
3592197 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 46.0 4.29e-01 77.2% 95.2%
3348685 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.62 52.0 4.29e-01 91.1% 51.9%
3657380 109.4.1.1279 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long, TPR_24 0.62 50.0 3.40e-01 88.1% 35.2%
3662208 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.61 51.0 3.85e-01 91.1% 38.4%
3721073 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.61 53.0 4.89e-01 99.0% 73.3%
3886094 109.3.1.96 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.61 52.0 3.99e-01 94.1% 46.5%
4159497 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 49.0 3.11e-01 89.1% 37.9%
3808794 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.60 52.0 4.44e-01 95.0% 62.4%
3655268 109.4.1.189 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 0.59 50.0 4.54e-01 96.0% 75.2%
3599805 109.4.1.1256 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.59 48.0 4.15e-01 89.1% 78.8%
3592461 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 49.0 4.43e-01 92.1% 74.3%
4003778 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 42.0 3.14e-01 77.2% 33.3%
3699906 109.4.1.1522 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2, PPR_3, TPR_24 0.57 48.0 4.41e-01 96.0% 72.9%
3298490 109.4.1.189 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 0.57 45.0 4.35e-01 86.1% 76.5%
3517194 109.54.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 0.57 44.0 2.85e-01 83.2% 20.6%
3717781 109.4.1.1256 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.55 49.0 3.36e-01 100.0% 69.5%
3447388 109.4.1.30 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FAT 0.53 47.0 3.46e-01 100.0% 71.0%
3328896 109.4.1.3010 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Eplus_motif, E_motif 0.53 46.0 4.07e-01 100.0% 92.9%