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hypothetical_protein_pv_360

Euk-Vir

Pithovirus_sibericum

hypothetical_protein_pv_360__YP_009001262__Pithovirus_sibericum__1450746

Identity

Accession:
YP_009001262 ↗
Protein ID:
hypothetical_protein_pv_360
Kingdom:
euk

Quality

73.5 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Pithoviridae› Alphapithovirus› Pithovirus_sibericum

TaxID: 1450746

Cluster

View cluster (39 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-56
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3v7dD01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.77 68.0 5.64e-01 100.0% 64.0%
6m90A01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.76 67.0 5.56e-01 100.0% 77.8%
5ibkB00 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.75 55.0 5.94e-01 78.6% 95.7%
3l2oB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.74 65.0 5.64e-01 100.0% 93.2%
1rykA00 1.10.1470.10 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ 0.67 39.0 3.62e-01 73.2% 46.4%
1fs2A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.67 60.0 3.84e-01 100.0% 36.7%
2r0bA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.65 50.0 3.75e-01 87.5% 96.7%
1e7lA02 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.61 44.0 4.49e-01 75.0% 78.2%
1f5qB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.59 44.0 3.51e-01 87.5% 80.4%
7ncyB01 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.59 50.0 3.95e-01 96.4% 52.1%
2qtlA03 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.59 49.0 3.69e-01 100.0% 60.0%
1yn9B00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.57 48.0 3.48e-01 96.4% 38.5%
2p0tA02 1.10.60.30 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › PSPTO4464-like domains 0.54 40.0 3.86e-01 89.3% 70.8%
1q2lA04 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.53 39.0 2.71e-01 83.9% 68.4%
3vokA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 41.0 3.06e-01 94.6% 65.9%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 46.0 2.78e-01 100.0% 35.1%
ECOD (97)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3931145 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.91 63.0 7.33e-01 73.2% 100.0%
3802856 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.90 74.0 7.49e-01 87.5% 90.9%
3805051 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.87 65.0 6.87e-01 78.6% 94.0%
3182011 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.86 64.0 7.04e-01 78.6% 100.0%
3344585 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.85 68.0 6.47e-01 85.7% 75.4%
3443890 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.85 64.0 7.04e-01 80.4% 100.0%
3408565 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.84 63.0 6.99e-01 98.2% 100.0%
3861026 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 75.0 6.16e-01 100.0% 64.3%
3176493 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.82 71.0 5.71e-01 96.4% 81.0%
3239129 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.82 56.0 6.34e-01 71.4% 100.0%
3795292 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.81 55.0 6.28e-01 75.0% 100.0%
3250247 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 67.0 6.54e-01 94.6% 83.3%
3806575 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.80 65.0 6.54e-01 87.5% 94.5%
3903969 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 72.0 6.14e-01 100.0% 77.8%
4013834 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 66.0 6.09e-01 89.3% 72.9%
3743076 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 69.0 5.80e-01 98.2% 83.2%
4545458 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 69.0 5.71e-01 100.0% 64.0%
3250931 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 69.0 6.31e-01 100.0% 77.3%
3244730 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.78 58.0 6.28e-01 85.7% 97.8%
3259869 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 68.0 5.97e-01 98.2% 78.8%
3209791 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 70.0 6.69e-01 100.0% 89.2%
3826054 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.78 61.0 6.22e-01 85.7% 90.9%
3407033 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 70.0 6.35e-01 100.0% 89.3%
3312720 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.78 68.0 6.22e-01 98.2% 90.7%
3507975 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.78 69.0 4.28e-01 100.0% 20.3%
3522358 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 69.0 6.25e-01 100.0% 81.3%
3901480 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 70.0 6.15e-01 100.0% 80.0%
3781279 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 66.0 5.92e-01 98.2% 80.0%
3806680 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.77 62.0 6.47e-01 94.6% 100.0%
3886321 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 65.0 5.85e-01 96.4% 68.8%
3348915 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 67.0 5.42e-01 100.0% 72.7%
3696138 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 67.0 5.69e-01 100.0% 80.0%
3698023 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 68.0 5.37e-01 100.0% 73.9%
3652521 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 68.0 6.27e-01 100.0% 87.7%
3254943 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 61.0 6.38e-01 85.7% 96.0%
4023099 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 68.0 5.35e-01 100.0% 80.9%
3649929 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.76 62.0 5.38e-01 89.3% 61.2%
3854965 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 67.0 5.74e-01 100.0% 95.6%
3711287 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.76 67.0 5.47e-01 100.0% 55.8%
3731690 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.76 65.0 5.79e-01 96.4% 81.2%
3726840 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 68.0 6.14e-01 100.0% 85.3%
3613821 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 68.0 6.31e-01 100.0% 82.9%
3194125 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 67.0 5.97e-01 100.0% 88.7%
3276040 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 65.0 6.02e-01 100.0% 75.7%
3208443 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 67.0 5.45e-01 100.0% 74.3%
3806475 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 66.0 6.03e-01 100.0% 78.7%
3248494 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 63.0 6.07e-01 94.6% 86.2%
3176338 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 68.0 6.02e-01 100.0% 78.8%
3527636 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.75 63.0 5.49e-01 96.4% 71.9%
3646821 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 65.0 5.96e-01 100.0% 78.7%
3740971 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 66.0 5.77e-01 100.0% 74.1%
3228112 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.75 66.0 5.09e-01 100.0% 56.0%
3427473 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.75 57.0 5.78e-01 83.9% 90.9%
3810074 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.75 64.0 5.81e-01 100.0% 77.2%
3807176 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.75 69.0 4.00e-01 100.0% 22.3%
3730967 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 66.0 5.39e-01 100.0% 72.4%
3726578 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 66.0 5.76e-01 100.0% 82.4%
3664299 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.74 65.0 5.50e-01 100.0% 74.7%
3742900 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.74 66.0 4.97e-01 100.0% 80.7%
3806093 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.74 54.0 5.62e-01 78.6% 92.0%
3909942 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.74 64.0 5.19e-01 100.0% 55.5%
3257387 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.74 65.0 5.66e-01 100.0% 75.3%
3345485 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.73 65.0 6.26e-01 100.0% 87.5%
3261282 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.73 63.0 6.37e-01 100.0% 100.0%
4022899 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.73 65.0 5.37e-01 100.0% 76.0%
3686440 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.73 64.0 5.71e-01 100.0% 97.5%
3833527 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.73 63.0 6.22e-01 98.2% 90.0%
3210778 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.73 63.0 5.79e-01 100.0% 93.3%
3648014 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.73 62.0 5.71e-01 100.0% 84.0%
3174979 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 63.0 5.66e-01 100.0% 83.7%
3631167 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 64.0 5.57e-01 100.0% 83.5%
3699732 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 61.0 5.70e-01 96.4% 81.4%
4019682 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 62.0 5.30e-01 100.0% 80.0%
3792735 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.72 62.0 3.75e-01 98.2% 18.5%
3544730 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 62.0 5.38e-01 100.0% 72.2%
3803973 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 62.0 5.82e-01 100.0% 84.3%
3624250 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.72 63.0 3.65e-01 98.2% 22.2%
3636704 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 64.0 5.03e-01 100.0% 89.6%
3617289 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 61.0 6.03e-01 96.4% 95.0%
3552610 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.71 63.0 5.76e-01 100.0% 83.8%
4002233 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.71 63.0 3.66e-01 98.2% 22.2%
3575456 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.71 62.0 5.29e-01 98.2% 80.0%
3817535 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.71 62.0 3.80e-01 98.2% 30.7%
3456664 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.71 55.0 5.60e-01 87.5% 94.5%
3446581 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.71 62.0 5.43e-01 100.0% 88.2%
3311874 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.71 61.0 5.63e-01 100.0% 86.7%
3666811 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.70 59.0 4.75e-01 100.0% 53.3%
3422328 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.70 63.0 5.45e-01 100.0% 82.4%
3201568 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.70 61.0 5.67e-01 98.2% 81.4%
3335288 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.69 60.0 4.83e-01 100.0% 50.4%
3301911 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.69 60.0 5.26e-01 100.0% 64.7%
3429995 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.68 59.0 5.46e-01 100.0% 79.5%
3822894 109.4.1.2392 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › F-box 0.68 54.0 4.10e-01 89.3% 62.9%
3652288 145.1.1.50 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › Kelch_1 0.67 56.0 3.52e-01 96.4% 33.0%
3382476 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.67 58.0 5.46e-01 100.0% 82.9%
3244546 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.66 56.0 3.50e-01 96.4% 45.8%
3692055 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.64 59.0 5.64e-01 100.0% 87.5%
D2 medium residues 57-119
PDB
Domain cluster: rep: hypothetical_protein_pv_361__YP_009001263__Pithovirus_sibericum__1450746__D72-130
D3 medium residues 120-199
PDB
D4 medium residues 405-501
PDB