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hypothetical_protein_pv_391

Euk-Vir

Pithovirus_sibericum

hypothetical_protein_pv_391__YP_009001292__Pithovirus_sibericum__1450746

Identity

Accession:
YP_009001292 ↗
Protein ID:
hypothetical_protein_pv_391
Kingdom:
euk

Quality

53.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-45
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3okqA00 1.20.58.1540 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain 0.89 60.0 4.25e-01 73.3% 25.6%
5exeA01 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.87 59.0 3.59e-01 75.6% 12.8%
4nleA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.78 59.0 5.02e-01 88.9% 50.0%
3dsbA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.75 51.0 3.94e-01 77.8% 31.7%
4gx0A01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.74 64.0 4.95e-01 100.0% 71.8%
1h99A02 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.74 54.0 4.04e-01 80.0% 33.0%
1t8rA01 3.30.1730.10 Alpha Beta › 2-Layer Sandwich › amp nucleosidase, domain 1 › AMP nucleoside phosphorylase, N-terminal domain 0.73 58.0 4.06e-01 91.1% 29.1%
2j91A03 6.10.250.1570 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.72 52.0 5.40e-01 84.4% 87.8%
1q16B03 1.10.3650.10 Mainly Alpha › Orthogonal Bundle › nitrate reductase domain fold › nitrate reductase domain like 0.72 54.0 4.61e-01 88.9% 49.4%
3s4lA00 1.10.3210.30 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › 0.71 50.0 3.27e-01 82.2% 17.3%
4ielA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.66 54.0 4.08e-01 93.3% 84.5%
3hdiA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.65 56.0 3.68e-01 100.0% 34.8%
4ri6A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.62 51.0 3.84e-01 97.8% 66.4%
2db7A01 6.10.250.980 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.61 51.0 4.90e-01 100.0% 94.3%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4974370 103.4.1.0 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.81 67.0 5.43e-01 100.0% 49.4%
3831185 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.81 71.0 6.13e-01 100.0% 65.7%
4929842 386.1.1.65 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF1059 0.77 51.0 5.12e-01 75.6% 68.9%
3709551 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 49.0 4.49e-01 73.3% 50.0%
4874103 208.1.1.4 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep,Hexapep_2 0.75 50.0 3.31e-01 97.8% 18.5%
1036939 5054.1.1.8 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.74 64.0 5.14e-01 100.0% 81.3%
3420489 148.1.1.0 alpha arrays › Histone-like › Histone-related › Histone 0.73 60.0 5.30e-01 95.6% 64.3%
3391362 2492.1.1.36 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › ODR4-like 0.73 48.0 3.16e-01 73.3% 16.8%
4938927 5054.1.1.8 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.71 58.0 4.72e-01 100.0% 50.5%
4943798 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.70 60.0 3.80e-01 97.8% 36.8%
3948059 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.69 50.0 3.82e-01 77.8% 36.2%
3399453 386.1.1.1 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.64 47.0 4.03e-01 77.8% 72.9%
5053903 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 50.0 3.77e-01 91.1% 34.2%
4959989 386.1.1.65 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF1059 0.63 50.0 4.70e-01 91.1% 94.8%
3450729 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.54 37.0 3.36e-01 80.0% 48.6%
D2 high residues 168-232
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.73 51.0 3.30e-01 73.8% 29.1%
2qc5A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.68 48.0 3.07e-01 73.8% 28.2%
3e5zA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.68 47.0 3.09e-01 73.8% 35.2%
2e7zA01 2.20.25.90 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains 0.62 42.0 4.45e-01 70.8% 89.5%
3sokB00 3.30.700.10 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin 0.60 51.0 4.03e-01 98.5% 73.9%
3mi6A01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.59 52.0 3.33e-01 100.0% 69.9%
4ojuA00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.58 42.0 3.27e-01 76.9% 52.8%
4jxuA02 3.20.10.10 Alpha Beta › Alpha-Beta Barrel › D-amino Acid Aminotransferase; Chain A, domain 2 › D-amino Acid Aminotransferase, subunit A, domain 2 0.57 42.0 3.25e-01 81.5% 61.0%
4gt6A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.56 43.0 2.67e-01 84.6% 18.2%
3soyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 38.0 3.07e-01 75.4% 85.2%
4bbyA02 3.30.160.650 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 29.0 3.36e-01 73.8% 72.7%
2xpfB02 3.20.10.10 Alpha Beta › Alpha-Beta Barrel › D-amino Acid Aminotransferase; Chain A, domain 2 › D-amino Acid Aminotransferase, subunit A, domain 2 0.54 40.0 3.11e-01 81.5% 61.9%
1xkiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 48.0 3.88e-01 100.0% 89.8%
3w15A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 42.0 2.70e-01 86.2% 26.3%
4fnvA02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 46.0 3.09e-01 100.0% 79.4%
2yfoA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.53 45.0 2.97e-01 100.0% 88.0%
4f3nA00 3.40.50.12710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 44.0 2.82e-01 96.9% 69.0%
2g7jA00 3.90.1150.40 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Protein of unknown function DUF2002 0.53 42.0 3.71e-01 96.9% 86.6%
3blnA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 39.0 3.27e-01 90.8% 76.1%
1kcfB00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 44.0 3.03e-01 95.4% 86.4%
3dg6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 37.0 3.09e-01 76.9% 93.0%
3iteB01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.51 41.0 2.59e-01 93.8% 35.7%
1e1hA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.51 38.0 2.68e-01 83.1% 86.8%
4rnyA02 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 42.0 3.35e-01 96.9% 79.6%
2x5gA00 3.30.720.60 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.50 41.0 3.80e-01 96.9% 82.4%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3697213 5.1.3.11 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › MRJP 0.73 49.0 3.06e-01 70.8% 33.9%
None 0.69 49.0 3.18e-01 73.8% 43.3%
4425568 5.1.4.163 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Vgb_lyase 0.68 48.0 3.09e-01 73.8% 41.7%
4958399 5.1.3.276 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FlgD_ig 0.68 47.0 2.77e-01 73.8% 14.2%
3536979 5.1.3.7 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › NHL 0.67 47.0 3.06e-01 73.8% 26.8%
3346566 1.1.7.85 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › BRX 0.67 45.0 4.89e-01 70.8% 100.0%
3827622 12.2.1.7 beta sandwiches › Glycosyl hydrolase domain-like › Hyaluronate lyase-like, C-terminal domain › Hyaluronate lyase-like, C-terminal domain › BRX 0.66 48.0 4.98e-01 76.9% 98.3%
3743240 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.64 50.0 4.85e-01 86.2% 86.7%
3937996 5.1.3.7 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › NHL 0.64 46.0 3.04e-01 76.9% 33.0%
3935301 391.1.2.11 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC2L_2nd 0.64 38.0 4.13e-01 73.8% 70.9%
4019237 304.48.1.37 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_2 0.63 55.0 3.76e-01 100.0% 27.2%
3218687 5.1.3.128 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › TEN_NHL 0.63 47.0 2.94e-01 80.0% 29.7%
4810204 5.1.3.128 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › TEN_NHL 0.62 46.0 2.90e-01 80.0% 19.7%
4622995 1001.1.1.0 a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 0.62 44.0 4.53e-01 75.4% 90.0%
3788344 5.1.4.337 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, WD40_CDC20-Fz 0.61 44.0 2.76e-01 76.9% 23.7%
3469499 327.11.2.3 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 0.60 43.0 3.35e-01 76.9% 44.0%
4271896 5.1.3.18 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SdiA-regulated 0.60 43.0 2.88e-01 76.9% 30.4%
5002456 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.60 50.0 3.88e-01 100.0% 42.9%
3413447 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 41.0 4.39e-01 93.8% 87.3%
3992587 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 41.0 2.40e-01 72.3% 24.9%
3202295 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.58 43.0 2.74e-01 84.6% 22.4%
3275111 5.1.4.304 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_2nd 0.57 41.0 2.61e-01 75.4% 23.5%
4639076 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 49.0 4.36e-01 95.4% 65.3%
3409554 708.1.1.4 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.57 46.0 4.08e-01 89.2% 76.8%
3459959 192.8.1.454 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Kinesin 0.56 41.0 2.55e-01 78.5% 80.3%
4483396 6148.1.1.2 few secondary structure elements › N-terminal domain of EpCAM › N-terminal domain of EpCAM › N-terminal domain of EpCAM › Thyroglobulin_1 0.56 38.0 2.87e-01 70.8% 61.8%
3887402 386.1.1.71 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › SURF2 0.55 38.0 3.92e-01 93.8% 75.0%
4571749 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.55 37.0 2.86e-01 72.3% 90.9%
4027091 375.3.1.2 few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger › zf-CSL 0.54 39.0 4.12e-01 95.4% 90.9%
3665681 2004.1.1.26 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin 0.54 38.0 2.29e-01 73.8% 78.5%
3927557 246.2.1.4 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos,STPPase_N 0.53 41.0 2.70e-01 86.2% 65.0%
3172934 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.53 44.0 2.98e-01 100.0% 66.9%
3501222 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 38.0 2.59e-01 78.5% 34.4%
3463561 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.52 45.0 2.83e-01 100.0% 79.9%
3924468 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 40.0 2.52e-01 81.5% 24.9%
3637299 245.1.1.0 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.52 36.0 3.22e-01 72.3% 87.1%
3236478 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.52 36.0 2.79e-01 72.3% 61.1%
3389940 708.1.1.4 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.52 41.0 3.76e-01 92.3% 73.3%
3788662 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.51 40.0 3.83e-01 92.3% 98.8%
3703858 207.1.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6 0.51 42.0 2.71e-01 96.9% 20.6%
3770241 77.2.1.1 beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.50 39.0 3.38e-01 90.8% 70.4%