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hypothetical_protein_pv_424
Euk-VirPithovirus_sibericum
hypothetical_protein_pv_424__YP_009001325__Pithovirus_sibericum__1450746
Identity
- Accession:
- YP_009001325 ↗
- Protein ID:
- hypothetical_protein_pv_424
- Kingdom:
- euk
Quality
70.3
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Pithoviridae›
Alphapithovirus›
Pithovirus_sibericum
TaxID: 1450746
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 212-267_365-458
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2h84A02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.57 | 42.0 | 4.32e-01 | 95.3% | 79.1% |
| 3v7iA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.55 | 41.0 | 4.14e-01 | 92.7% | 76.9% |
| 1uhvA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.54 | 34.0 | 2.65e-01 | 77.3% | 26.7% |
| 3euoA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.54 | 42.0 | 4.22e-01 | 94.7% | 79.6% |
| 3wxyA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.53 | 41.0 | 4.13e-01 | 94.7% | 79.2% |
| 1u0mA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.53 | 39.0 | 3.97e-01 | 95.3% | 77.4% |
| 1w2yA00 | 1.10.4010.10 | Mainly Alpha › Orthogonal Bundle › all-alpha NTP pyrophosphatase fold › Type II deoxyuridine triphosphatase | 0.53 | 42.0 | 3.71e-01 | 84.7% | 83.2% |
| 1q0gA00 | 1.20.120.400 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nickel-containing superoxide dismutase | 0.52 | 36.0 | 4.00e-01 | 96.0% | 89.7% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1516022 | 7581.1.1.6 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Chal_sti_synt_C | 0.55 | 41.0 | 4.16e-01 | 95.3% | 77.9% |
| 3244409 | 3914.1.1.0 ↗ | alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain | 0.55 | 35.0 | 3.64e-01 | 88.0% | 67.1% |
| 3742987 | 5045.1.1.1 ↗ | alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › ATP-synt_A | 0.53 | 42.0 | 3.60e-01 | 84.7% | 96.8% |
| 3596492 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.53 | 37.0 | 3.26e-01 | 72.0% | 55.8% |
| 3743040 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.52 | 36.0 | 4.04e-01 | 83.3% | 95.5% |
| 4676069 | 7581.1.1.34 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Chal_sti_synt_N, Chal_sti_synt_C, FAE1_CUT1_RppA | 0.51 | 40.0 | 2.99e-01 | 94.7% | 31.8% |
D2
medium
residues 40-104_173-203
D3
medium
residues 105-116_131-172_268-318
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2w9mB03 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.59 | 34.0 | 3.82e-01 | 96.2% | 74.1% |
| 3c18A01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.58 | 34.0 | 3.37e-01 | 100.0% | 53.0% |
| 1hfvA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 36.0 | 3.10e-01 | 86.7% | 40.9% |
| 3oesA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 35.0 | 3.08e-01 | 83.8% | 42.0% |
| 2jrbA00 | 3.30.250.20 | Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › L1 transposable element, C-terminal domain | 0.55 | 28.0 | 3.45e-01 | 81.0% | 78.5% |
| 6jmgB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 36.0 | 3.07e-01 | 84.8% | 41.0% |
| 2fclA00 | 3.30.460.40 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.53 | 38.0 | 3.35e-01 | 100.0% | 50.0% |
| 1yu9A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 35.0 | 3.03e-01 | 83.8% | 42.5% |
| 2d56A00 | 3.30.30.110 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › Antibacterial factor-related peptide | 0.53 | 21.0 | 2.85e-01 | 73.3% | 67.9% |
| 2k75A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 29.0 | 3.00e-01 | 100.0% | 55.3% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4937226 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.57 | 40.0 | 3.00e-01 | 72.4% | 73.1% |
| 3839991 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.52 | 42.0 | 3.21e-01 | 86.7% | 39.6% |
| 3735908 | 109.4.1.1588 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27584, PF27595, PF30849 | 0.50 | 37.0 | 2.12e-01 | 78.1% | 46.3% |