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hypothetical_protein_pv_60

Euk-Vir

Pithovirus_sibericum

hypothetical_protein_pv_60__YP_009000962__Pithovirus_sibericum__1450746

Identity

Accession:
YP_009000962 ↗
Protein ID:
hypothetical_protein_pv_60
Kingdom:
euk

Quality

61.9 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Pithoviridae› Alphapithovirus› Pithovirus_sibericum

TaxID: 1450746

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-123
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vctA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.62 42.0 4.43e-01 70.0% 83.5%
3r2qA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.61 49.0 5.07e-01 90.8% 91.2%
5vjcA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.61 52.0 4.04e-01 92.5% 58.4%
4agsA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.60 47.0 4.56e-01 90.8% 74.8%
3peuB00 1.25.40.510 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › GLE1-like 0.59 53.0 3.96e-01 97.5% 67.8%
8ciwB01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.58 42.0 4.33e-01 75.8% 84.3%
3wd6A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.58 47.0 4.77e-01 89.2% 89.0%
4dloB02 1.25.40.610 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.58 47.0 4.83e-01 95.0% 90.6%
5xdcB01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.58 42.0 4.32e-01 79.2% 81.1%
4mk3A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.58 45.0 4.65e-01 89.2% 88.7%
4f03B02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.58 47.0 4.48e-01 89.2% 93.8%
3m0fB02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.57 46.0 4.61e-01 90.8% 85.4%
3swhA01 1.10.357.50 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.57 49.0 4.47e-01 95.0% 89.1%
4a64C03 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.57 42.0 4.59e-01 83.3% 93.0%
4gltA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.57 46.0 4.70e-01 89.2% 91.2%
1n4kA02 1.25.10.30 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › IP3 receptor type 1 binding core, RIH domain 0.57 48.0 4.53e-01 93.3% 87.8%
4agsB04 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.56 44.0 4.34e-01 90.8% 78.9%
4w66B00 1.20.1050.130 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 45.0 3.72e-01 89.2% 47.7%
1w99A01 1.20.190.10 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain 0.55 47.0 4.21e-01 95.8% 88.4%
4kf9A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 45.0 4.38e-01 90.0% 99.3%
3mekA03 1.10.220.160 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › 0.54 35.0 4.01e-01 75.0% 90.7%
4kkiA01 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.53 46.0 3.55e-01 97.5% 44.6%
1zk8B02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 37.0 3.67e-01 73.3% 76.5%
3ppbA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 46.0 3.99e-01 97.5% 80.3%
2qw5A00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.52 46.0 3.42e-01 100.0% 56.0%
2w00A05 1.20.58.2040 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 39.0 4.25e-01 95.0% 95.0%
7mqzA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 40.0 3.43e-01 99.2% 50.5%
6wb9201 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.50 41.0 3.21e-01 100.0% 37.7%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3449385 109.4.1.903 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_28 0.62 56.0 3.48e-01 100.0% 26.3%
5029232 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.61 51.0 4.45e-01 90.8% 80.9%
3641904 109.4.1.1185 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › BTB-POZ_ANK-like 0.61 55.0 4.21e-01 100.0% 64.1%
148583 109.1.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C 0.60 48.0 4.88e-01 88.3% 85.8%
3684033 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 52.0 4.09e-01 96.7% 62.3%
3633920 109.4.1.464 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Exportin-T 0.59 53.0 3.88e-01 100.0% 50.6%
3741524 109.4.1.17 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cullin 0.58 51.0 3.64e-01 100.0% 45.8%
3808573 109.4.1.3485 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, DYW_deaminase, Eplus_motif, E_motif 0.58 42.0 2.91e-01 100.0% 21.7%
3310260 109.4.1.1269 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif 0.57 40.0 2.88e-01 100.0% 22.9%
3661171 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.57 44.0 2.83e-01 100.0% 17.7%
3651383 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.57 43.0 3.51e-01 100.0% 42.2%
4057646 109.4.1.506 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nop14 0.56 50.0 3.57e-01 100.0% 31.7%
3199641 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.56 49.0 3.37e-01 97.5% 29.4%
3657071 109.4.1.2208 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif, TPR_24 0.56 40.0 2.80e-01 100.0% 21.8%
3181670 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.56 48.0 3.27e-01 95.8% 26.7%
3374025 109.4.1.1272 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif 0.56 42.0 3.43e-01 100.0% 41.7%
3598058 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 50.0 3.89e-01 100.0% 70.0%
3682610 109.4.1.1292 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3 0.55 48.0 3.04e-01 100.0% 17.6%
3423437 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 49.0 4.39e-01 98.3% 80.6%
3726917 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.55 47.0 3.19e-01 95.8% 26.9%
3289317 191.1.1.41 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › EthR_C 0.54 39.0 3.69e-01 75.0% 76.7%
3459730 601.3.1.13 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › TMEM33_Pom33 0.54 49.0 4.02e-01 100.0% 94.6%
3808392 109.4.1.1269 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif 0.54 40.0 3.29e-01 100.0% 40.0%
3690080 603.5.1.0 ↗ alpha bundles › STAT-like › FlgN-like › FlgN-like 0.54 44.0 4.48e-01 89.2% 96.6%
3702673 109.4.1.17 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cullin 0.53 47.0 3.25e-01 100.0% 29.3%
3290328 159.1.1.1 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › MazG 0.53 38.0 4.04e-01 92.5% 84.8%
3939098 5082.1.1.0 ↗ alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like 0.53 38.0 3.21e-01 75.8% 83.7%
3355612 5073.1.2.7 ↗ alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Copper efflux ATPase transmembrane domain › PhoLip_ATPase_C 0.53 37.0 3.06e-01 72.5% 86.7%
5031295 601.7.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like 0.53 37.0 3.58e-01 90.8% 62.9%
3435495 109.4.1.1269 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif 0.52 38.0 3.56e-01 100.0% 60.1%
3466671 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.51 37.0 2.80e-01 97.5% 28.4%
D2 medium residues 170-260
PDB