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hypothetical_protein_pv_80

Euk-Vir

Pithovirus_sibericum

hypothetical_protein_pv_80__YP_009000982__Pithovirus_sibericum__1450746

Identity

Accession:
YP_009000982 ↗
Protein ID:
hypothetical_protein_pv_80
Kingdom:
euk

Quality

72.4 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Pithoviridae› Alphapithovirus› Pithovirus_sibericum

TaxID: 1450746

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 139-264
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vwaA03 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.71 55.0 4.15e-01 81.0% 39.3%
7ldgA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.70 55.0 4.58e-01 84.1% 63.2%
1ho8A01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.70 63.0 4.67e-01 100.0% 78.9%
1juqC00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.69 54.0 5.15e-01 83.3% 85.2%
2of3A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.69 59.0 4.68e-01 94.4% 70.3%
4g3aB00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.68 54.0 4.45e-01 84.9% 53.8%
1w63A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.68 55.0 3.53e-01 85.7% 25.8%
1te4A01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.68 47.0 5.35e-01 77.0% 100.0%
4dvgB00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.65 52.0 3.96e-01 85.7% 52.1%
1sz9C00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.65 51.0 4.95e-01 83.3% 90.0%
5cwkA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.64 49.0 4.52e-01 82.5% 72.6%
3bwtA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.62 56.0 4.15e-01 100.0% 56.5%
5ab0C04 1.25.50.20 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › 0.61 54.0 4.03e-01 98.4% 44.2%
1iygA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.60 44.0 4.34e-01 97.6% 71.4%
3vldA02 1.25.40.580 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.60 53.0 4.95e-01 99.2% 78.4%
5mj6A04 1.25.50.20 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › 0.59 53.0 3.96e-01 100.0% 44.7%
1dvpA01 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.59 51.0 4.99e-01 96.0% 91.4%
6idxA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.59 52.0 4.39e-01 99.2% 80.4%
4g26A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 52.0 3.95e-01 98.4% 56.3%
2i6hA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 33.0 3.65e-01 79.4% 71.9%
4uucA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.56 50.0 4.20e-01 100.0% 71.0%
2i2xB01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.55 38.0 4.19e-01 71.4% 95.0%
2e52B01 3.40.91.70 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Type II restriction endonuclease, HindIII 0.53 46.0 3.89e-01 98.4% 74.1%
4huqS00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.51 37.0 3.45e-01 75.4% 82.9%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3444013 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.67 55.0 5.17e-01 88.9% 74.8%
3545225 109.4.1.536 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Mei4 0.66 52.0 3.96e-01 84.9% 59.3%
3465042 109.3.1.20 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2,Ank_4 0.65 59.0 4.20e-01 100.0% 49.2%
3190723 109.4.1.1506 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_EZ, Importin_rep_4, Importin_rep_6, TPR_IMB1, TPR_IPO5 0.65 58.0 3.52e-01 100.0% 26.1%
3338592 109.4.1.1258 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 0.65 54.0 4.51e-01 91.3% 65.8%
3547149 109.4.1.117 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › STAG,SCD 0.64 58.0 3.99e-01 100.0% 68.4%
3260306 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 48.0 4.84e-01 79.4% 77.7%
3348296 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 47.0 5.11e-01 81.0% 92.4%
3257617 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.64 58.0 4.01e-01 100.0% 35.3%
4279904 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.64 49.0 3.77e-01 80.2% 67.6%
3826523 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.62 56.0 5.07e-01 99.2% 92.9%
4027101 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 55.0 3.92e-01 100.0% 42.9%
4003778 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 44.0 3.47e-01 76.2% 45.6%
3821942 109.3.1.169 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2, Ank_4, Ank_5 0.60 53.0 3.67e-01 99.2% 51.9%
3370248 109.3.1.162 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 0.59 52.0 3.67e-01 100.0% 40.5%
3840772 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.58 51.0 4.18e-01 96.0% 60.9%
3434424 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.57 45.0 4.69e-01 87.3% 93.0%
3808794 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.55 48.0 4.42e-01 96.8% 82.4%
3665356 109.3.1.184 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, NPR1_like_C, Ank_2 0.52 43.0 4.18e-01 92.1% 97.9%
D2 medium residues 338-397
PDB