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hypothetical_protein_pv_9
Euk-VirPithovirus_sibericum
hypothetical_protein_pv_9__YP_009000911__Pithovirus_sibericum__1450746
Identity
- Accession:
- YP_009000911 ↗
- Protein ID:
- hypothetical_protein_pv_9
- Kingdom:
- euk
Quality
62.2
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Pithoviridae›
Alphapithovirus›
Pithovirus_sibericum
TaxID: 1450746
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-126
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3f4rA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.66 | 55.0 | 5.34e-01 | 100.0% | 80.0% |
| 5e3iA02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.63 | 48.0 | 5.21e-01 | 97.5% | 97.0% |
| 7p8na01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.63 | 38.0 | 4.43e-01 | 95.1% | 86.7% |
| 4wi1A02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.62 | 48.0 | 4.86e-01 | 100.0% | 82.9% |
| 2q5iA03 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.62 | 47.0 | 4.78e-01 | 100.0% | 81.8% |
| 1nj1A02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.62 | 47.0 | 4.98e-01 | 99.2% | 95.2% |
| 1httA02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.61 | 45.0 | 4.89e-01 | 98.4% | 96.9% |
| 4hwtA02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.59 | 46.0 | 4.77e-01 | 100.0% | 90.9% |
| 2a4vA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.58 | 52.0 | 4.87e-01 | 100.0% | 79.7% |
| 1n8jA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.58 | 53.0 | 4.58e-01 | 100.0% | 71.5% |
| 5vmzA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.57 | 23.0 | 3.24e-01 | 99.2% | 97.4% |
| 1adjB02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.57 | 40.0 | 4.44e-01 | 97.5% | 96.8% |
| 3vzbB01 | 3.40.50.10330 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Probable inorganic polyphosphate/atp-NAD kinase; domain 1 | 0.56 | 50.0 | 4.81e-01 | 100.0% | 92.3% |
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.56 | 24.0 | 2.53e-01 | 100.0% | 42.2% |
| 2rsmA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 29.0 | 2.98e-01 | 75.4% | 50.4% |
| 3mazA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.54 | 39.0 | 4.24e-01 | 85.2% | 91.9% |
| 2el8A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.53 | 35.0 | 4.01e-01 | 98.4% | 91.2% |
| 2c9wA01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.53 | 43.0 | 4.45e-01 | 88.5% | 94.7% |
| 3bciA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 48.0 | 4.32e-01 | 99.2% | 98.2% |
| 1t6aA02 | 3.30.310.120 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein | 0.52 | 26.0 | 3.22e-01 | 93.4% | 75.6% |
| 4rxtA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 47.0 | 4.52e-01 | 100.0% | 89.8% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3223389 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.75 | 54.0 | 5.69e-01 | 99.2% | 82.7% |
| 4441936 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.65 | 49.0 | 4.82e-01 | 100.0% | 74.6% |
| 4110889 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.64 | 49.0 | 5.25e-01 | 100.0% | 94.3% |
| 4510149 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.64 | 47.0 | 5.15e-01 | 99.2% | 96.0% |
| 3715657 | 241.10.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain | 0.63 | 43.0 | 4.70e-01 | 92.6% | 85.9% |
| 4157435 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.62 | 46.0 | 5.01e-01 | 100.0% | 95.0% |
| 4248887 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.61 | 47.0 | 4.61e-01 | 100.0% | 75.4% |
| 4440746 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.61 | 46.0 | 4.65e-01 | 100.0% | 78.4% |
| 4947286 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.61 | 45.0 | 4.68e-01 | 100.0% | 83.5% |
| 4042731 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.61 | 45.0 | 4.93e-01 | 100.0% | 100.0% |
| 4136172 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.60 | 44.0 | 4.83e-01 | 98.4% | 97.9% |
| 3172618 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.60 | 45.0 | 4.96e-01 | 96.7% | 96.0% |
| 4078006 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.60 | 45.0 | 4.83e-01 | 100.0% | 93.3% |
| 4117289 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.60 | 45.0 | 4.85e-01 | 99.2% | 98.0% |
| 4228426 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.60 | 45.0 | 4.85e-01 | 100.0% | 96.0% |
| 4600127 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.58 | 44.0 | 4.47e-01 | 100.0% | 82.2% |
| 4072752 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.58 | 42.0 | 4.65e-01 | 99.2% | 98.9% |
| 4462675 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.54 | 40.0 | 4.37e-01 | 100.0% | 98.0% |
| 3429682 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 26.0 | 3.23e-01 | 82.0% | 74.7% |
| 4155213 | 219.1.1.50 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH_1 | 0.52 | 43.0 | 2.90e-01 | 90.2% | 47.2% |
| 3403609 | 247.1.1.38 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C | 0.52 | 30.0 | 3.59e-01 | 82.0% | 87.3% |
| 3762030 | 219.1.1.14 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Josephin | 0.51 | 37.0 | 3.75e-01 | 98.4% | 73.6% |
| 5051087 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.51 | 29.0 | 3.10e-01 | 100.0% | 60.9% |
| 3233501 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.51 | 40.0 | 4.18e-01 | 84.4% | 93.9% |
| 3453949 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.51 | 41.0 | 3.04e-01 | 86.1% | 65.3% |
| 5002755 | 375.1.1.299 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf | 0.50 | 21.0 | 3.10e-01 | 87.7% | 100.0% |