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ie-1

Euk-Vir

Cryptophlebia_peltastica_nucleopolyhedrovirus

ie-1__YP_010086897__Cryptophlebia_peltastica_nucleopolyhedrovirus__2304025

Identity

Accession:
YP_010086897 ↗
Protein ID:
ie-1
Kingdom:
euk

Quality

67.7 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Cryptophlebia_peltastica_nucleopolyhedrovirus

TaxID: 2304025

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 152-336
PDB
Domain cluster: rep: IE-1__YP_009330138__Plodia_interpunctella_granulovirus__262175__D62-179
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03430.21 best TATR 212.3 1.80e-62 99.5% 38.6%
D2 medium residues 356-436
PDB
Domain cluster: rep: ie-1__YP_009011216__Mamestra_brassicae_multiple_nucleopolyhedrovirus__78219__D389-432_446-475
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03430.21 best TATR 67.8 1.30e-18 100.0% 19.4%
D3 medium residues 437-556
PDB
Domain cluster: rep: ie-1__YP_008719954__Clostera_anastomosis_granulovirus_Henan__1986291__D326-471
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03430.21 best TATR 160.0 1.40e-46 95.0% 25.5%
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6fhoA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.67 52.0 4.34e-01 82.5% 88.7%
3v97A03 3.30.750.80 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › RNA methyltransferase domain (HRMD) like 0.60 41.0 4.73e-01 92.5% 97.6%
2b78A02 3.30.750.80 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › RNA methyltransferase domain (HRMD) like 0.60 44.0 4.72e-01 98.3% 90.2%
4hgzA02 2.20.25.570 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.60 29.0 3.87e-01 92.5% 90.0%
2l72A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.60 45.0 4.53e-01 78.3% 95.8%
3vseB02 3.30.750.80 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › RNA methyltransferase domain (HRMD) like 0.59 43.0 4.64e-01 98.3% 90.0%
1m61A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 37.0 3.97e-01 86.7% 77.9%
3rn5A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 27.0 3.07e-01 84.2% 58.7%
3k59A01 2.40.50.590 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › DNA polymerase B, N domain, beta-barrel 0.55 29.0 3.38e-01 85.0% 70.6%
4l5tB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 28.0 3.12e-01 82.5% 61.5%
4fpvB00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.55 45.0 3.44e-01 86.7% 52.9%
3ed5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 36.0 4.21e-01 94.2% 95.2%
4l6wB01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.54 41.0 3.69e-01 80.8% 68.4%
1v1pB02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 25.0 2.97e-01 80.8% 60.8%
4l5rC02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 27.0 3.13e-01 84.2% 62.9%
4i8oA02 3.30.160.690 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain 0.54 32.0 3.64e-01 97.5% 77.8%
1d4tA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 37.0 3.95e-01 96.7% 82.7%
3ke6B01 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.53 46.0 3.78e-01 94.2% 66.1%
2imqX00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.53 44.0 3.31e-01 88.3% 55.0%
4fvaC00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.53 43.0 3.39e-01 87.5% 54.2%
1k8kD02 3.30.1460.20 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.53 40.0 3.92e-01 100.0% 73.3%
2qb7B02 3.10.310.20 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain 0.52 40.0 3.86e-01 82.5% 76.4%
1y56A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 41.0 3.43e-01 85.8% 90.1%
3nemA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 29.0 3.09e-01 83.3% 61.0%
1bixA00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.51 41.0 3.13e-01 85.0% 55.3%
3fg6A01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.51 35.0 3.77e-01 77.5% 84.8%
3shpA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 46.0 4.16e-01 100.0% 97.6%
1pixA03 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.50 41.0 3.13e-01 90.0% 90.0%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4878203 7581.1.1.16 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › FAE1_CUT1_RppA 0.64 41.0 3.37e-01 79.2% 35.0%
3933100 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.64 28.0 3.54e-01 70.0% 67.1%
3925738 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.64 31.0 3.31e-01 75.0% 50.9%
4340675 3186.1.1.1 ↗ a+b two layers › C-terminal domain of FliK › C-terminal domain of FliK › C-terminal domain of FliK › Flg_hook 0.62 43.0 4.81e-01 70.0% 94.4%
5063524 2008.1.1.4 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.62 45.0 4.05e-01 98.3% 54.9%
4108958 2484.3.1.3 ↗ mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain › FACT-Spt16_Nlob 0.61 47.0 4.13e-01 80.0% 71.4%
5012820 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 29.0 3.21e-01 85.8% 53.7%
3549045 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.61 30.0 3.20e-01 75.0% 51.8%
3940149 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.60 35.0 3.98e-01 100.0% 76.7%
3797523 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.60 30.0 2.98e-01 75.0% 43.8%
5064436 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 31.0 3.36e-01 85.8% 58.0%
3787053 224.1.1.1 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.59 47.0 4.46e-01 84.2% 99.3%
4552570 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.59 34.0 3.57e-01 85.8% 60.9%
3514664 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.59 30.0 3.56e-01 77.5% 71.2%
3687025 224.1.1.1 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.58 45.0 4.52e-01 83.3% 96.8%
4943495 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 30.0 3.10e-01 82.5% 51.8%
4407831 3281.1.1.2 ↗ alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M,Proton_antipo_N 0.57 51.0 3.26e-01 100.0% 52.3%
4992252 2011.2.1.21 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › DUF1512_C 0.57 43.0 3.84e-01 79.2% 64.1%
4252143 2003.1.5.74 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltrans_SAM 0.57 46.0 3.34e-01 85.8% 37.9%
3176969 224.1.1.1 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.56 45.0 4.55e-01 85.8% 97.5%
4475641 2003.1.5.363 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › UPF0020, Methyltransf_11, Methyltrans_SAM 0.55 44.0 2.89e-01 85.8% 23.1%
4547854 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 33.0 3.51e-01 85.8% 65.5%
3479661 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 28.0 2.92e-01 71.7% 51.8%
4158231 247.1.1.5 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B,HAGH_C 0.55 40.0 3.16e-01 84.2% 37.1%
1102425 2.1.1.22 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › HIN 0.55 28.0 3.12e-01 83.3% 61.5%
4331589 2003.1.5.315 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › UPF0020, Methyltransf_15, Methyltrans_SAM 0.55 44.0 2.86e-01 86.7% 22.8%
None — 0.54 45.0 3.31e-01 89.2% 40.3%
3216768 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.53 28.0 2.97e-01 70.0% 56.2%
5042471 2003.1.5.42 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_21 0.53 39.0 3.11e-01 79.2% 49.1%
3812366 2484.1.1.20 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.52 39.0 3.31e-01 80.0% 82.8%
None — 0.52 40.0 2.99e-01 81.7% 56.9%
3700143 2484.1.1.48 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.52 36.0 3.24e-01 70.0% 79.4%
4538497 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.52 29.0 3.11e-01 84.2% 61.0%
5075363 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.52 39.0 2.63e-01 78.3% 59.8%
5045640 231.1.2.6 ↗ a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › DUF2070 0.52 42.0 3.05e-01 85.8% 69.1%
4961034 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.52 36.0 3.73e-01 78.3% 77.3%
5043502 231.1.2.6 ↗ a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › DUF2070 0.51 42.0 3.04e-01 86.7% 68.2%
5053650 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.51 29.0 2.89e-01 84.2% 51.2%
3592626 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 35.0 3.23e-01 70.0% 85.6%
4422116 247.1.1.5 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B,HAGH_C 0.51 36.0 2.87e-01 82.5% 35.5%
4932970 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.51 37.0 3.91e-01 85.0% 85.7%
5039990 231.1.2.6 ↗ a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › DUF2070 0.51 41.0 3.04e-01 88.3% 66.7%
4956292 231.1.2.6 ↗ a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › DUF2070 0.50 40.0 2.94e-01 85.8% 66.3%
3519114 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.50 31.0 3.24e-01 86.7% 65.5%
4225130 2.2.1.1 ↗ beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins › Stap_Strp_toxin 0.50 26.0 2.64e-01 84.2% 47.0%
3802532 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 38.0 3.22e-01 82.5% 79.5%