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immediate_early_1

Euk-Vir

Pseudoplusia_includens_SNPV_IE

immediate_early_1__YP_009116930__Pseudoplusia_includens_SNPV_IE__1592335

Identity

Accession:
YP_009116930 ↗
Protein ID:
immediate_early_1
Kingdom:
euk

Quality

60.6 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Pseudoplusia_includens_SNPV_IE

TaxID: 1592335

Cluster

View cluster (14 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 359-527
PDB
Domain cluster: rep: IE-1__YP_009330138__Plodia_interpunctella_granulovirus__262175__D62-179
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03430.21 best TATR 182.6 2.00e-53 100.0% 35.9%
D2 medium residues 663-780
PDB
Domain cluster: rep: ie-1__YP_008719954__Clostera_anastomosis_granulovirus_Henan__1986291__D326-471
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03430.21 best TATR 114.0 1.20e-32 83.0% 21.7%
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3o2sB01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.64 53.0 5.09e-01 89.0% 100.0%
3shpA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 46.0 4.09e-01 89.0% 68.9%
4fvaC00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.55 46.0 3.54e-01 88.1% 53.8%
3ed5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.54 35.0 4.07e-01 82.2% 91.7%
1h4rA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 24.0 2.65e-01 89.0% 47.3%
3k59A01 2.40.50.590 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › DNA polymerase B, N domain, beta-barrel 0.54 29.0 3.32e-01 87.3% 70.6%
2nttA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 25.0 3.13e-01 87.3% 71.4%
1xknA00 3.75.10.10 Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A 0.53 43.0 3.13e-01 88.1% 71.4%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.53 32.0 3.51e-01 86.4% 75.8%
3bt7A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 34.0 2.83e-01 84.7% 34.8%
4obiA00 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.52 29.0 3.36e-01 91.5% 74.7%
2imqX00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.52 44.0 3.29e-01 89.8% 54.6%
3i7fA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 31.0 3.07e-01 89.8% 53.9%
6l4lA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.52 37.0 3.62e-01 75.4% 100.0%
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.51 29.0 3.33e-01 71.2% 75.0%
5f7vA00 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 38.0 2.65e-01 78.0% 88.4%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3231673 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 33.0 4.17e-01 78.0% 74.7%
2050699 2007.2.2.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphotyrosine protein phosphatases I-like › Ssu72 0.66 54.0 4.58e-01 88.1% 96.0%
4086119 5104.1.1.0 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.66 37.0 3.75e-01 84.7% 55.0%
4306585 2007.2.2.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphotyrosine protein phosphatases I-like › Ssu72 0.65 52.0 4.51e-01 84.7% 90.6%
2419913 219.1.1.66 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › ElaD-SseL-like_C 0.63 48.0 4.24e-01 80.5% 56.1%
3631697 286.1.1.0 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like 0.62 34.0 3.70e-01 78.0% 63.0%
3962117 2008.1.1.215 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF4191 0.62 42.0 4.37e-01 72.0% 74.5%
5012820 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 29.0 3.16e-01 88.1% 53.7%
3245213 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.60 43.0 4.52e-01 72.9% 100.0%
3516319 7575.1.1.0 ↗ a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like 0.58 46.0 4.13e-01 86.4% 75.4%
141372 2008.2.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.58 34.0 3.75e-01 86.4% 73.6%
3605286 2008.2.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.56 36.0 3.94e-01 84.7% 77.0%
3599702 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.54 48.0 3.54e-01 100.0% 79.7%
4948758 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.54 28.0 3.44e-01 84.7% 80.0%
4961034 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.53 37.0 3.86e-01 81.4% 77.3%
3743712 4178.1.1.1 ↗ beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › DUF5110 0.52 38.0 3.69e-01 92.4% 66.9%
5058096 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.52 27.0 3.11e-01 84.7% 68.2%
5076295 2008.1.1.107 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD 0.52 37.0 3.56e-01 74.6% 88.1%
3830828 7579.1.1.14 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 0.51 41.0 2.98e-01 84.7% 47.6%
3936082 224.1.1.0 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like 0.51 37.0 3.25e-01 78.8% 50.0%
3514938 213.1.1.6 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › ODC_AZ 0.50 41.0 4.10e-01 87.3% 95.0%
4932970 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.50 37.0 3.87e-01 86.4% 85.7%
3996656 246.3.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.50 41.0 3.59e-01 88.1% 81.7%