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inclusion_body_matrix_protein
Euk-VirHorseradish_latent_virus
inclusion_body_matrix_protein__YP_006907835__Horseradish_latent_virus__264076
Identity
- Accession:
- YP_006907835 ↗
- Protein ID:
- inclusion_body_matrix_protein
- Kingdom:
- euk
Quality
68.1
mean pLDDT
Taxonomy
Pararnavirae›
Artverviricota›
Revtraviricetes›
Ortervirales›
Caulimoviridae›
Caulimovirus›
Horseradish_latent_virus
TaxID: 264076
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 140-198
Domain cluster:
rep: hypothetical_protein__NP_042514__Peanut_chlorotic_streak_virus__35593__D80-128
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01693.24 best | Cauli_VI | 45.0 | 1.50e-11 | 72.9% | 91.1% |
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5exeA01 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.68 | 55.0 | 3.68e-01 | 91.5% | 36.0% |
| 4nqrA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.66 | 47.0 | 3.51e-01 | 76.3% | 87.7% |
| 3hcwA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.63 | 45.0 | 3.48e-01 | 78.0% | 84.6% |
| 1yt8A03 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.61 | 46.0 | 4.11e-01 | 84.7% | 98.9% |
| 5dynA01 | 3.40.50.11970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.60 | 45.0 | 3.85e-01 | 86.4% | 93.4% |
| 4j3cB02 | 3.40.1280.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain | 0.59 | 45.0 | 3.38e-01 | 86.4% | 44.8% |
| 1y44A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.59 | 46.0 | 3.04e-01 | 88.1% | 95.5% |
| 7s6eA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.58 | 45.0 | 3.66e-01 | 93.2% | 68.7% |
| 3hrgA02 | 3.30.420.260 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain | 0.58 | 46.0 | 3.79e-01 | 89.8% | 63.2% |
| 6r8gA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 45.0 | 3.52e-01 | 89.8% | 81.0% |
| 1efaA03 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.58 | 45.0 | 3.52e-01 | 89.8% | 72.0% |
| 3zdbA01 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.58 | 46.0 | 3.47e-01 | 91.5% | 86.6% |
| 3tgxB00 | 1.20.1250.70 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interleukin-15/Interleukin-21 | 0.57 | 46.0 | 3.74e-01 | 89.8% | 71.3% |
| 1at3A00 | 3.20.16.10 | Alpha Beta › Alpha-Beta Barrel › Serine Protease, Human Cytomegalovirus Protease; Chain A › Herpesvirus/Caudovirus protease domain | 0.57 | 48.0 | 3.39e-01 | 100.0% | 72.8% |
| 3mggB01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 39.0 | 3.03e-01 | 76.3% | 89.6% |
| 5dcaA09 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 44.0 | 3.16e-01 | 94.9% | 83.8% |
| 4alzA01 | 3.30.1340.30 | Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › | 0.55 | 39.0 | 3.89e-01 | 100.0% | 72.6% |
| 4rk6B02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.54 | 40.0 | 3.27e-01 | 89.8% | 66.9% |
| 3huuC02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.54 | 42.0 | 3.41e-01 | 91.5% | 44.4% |
| 4wesB04 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.54 | 44.0 | 3.83e-01 | 96.6% | 96.9% |
| 3weeB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 43.0 | 3.13e-01 | 89.8% | 77.8% |
| 1vhkA02 | 3.40.1280.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain | 0.53 | 46.0 | 3.35e-01 | 100.0% | 35.2% |
| 1a0iA03 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.53 | 39.0 | 2.97e-01 | 81.4% | 98.6% |
| 3evzA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 42.0 | 3.20e-01 | 98.3% | 42.2% |
| 2f8lA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 43.0 | 2.96e-01 | 100.0% | 30.7% |
| 6vq6I01 | 3.30.2320.30 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › ATP synthase, E subunit, C-terminal | 0.51 | 40.0 | 3.35e-01 | 100.0% | 48.1% |
| 3grzB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 42.0 | 2.99e-01 | 100.0% | 29.0% |
| 2xecC00 | 3.40.50.12500 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 44.0 | 2.93e-01 | 98.3% | 23.9% |
| 3e0mC01 | 3.30.1060.10 | Alpha Beta › 2-Layer Sandwich › Peptide Methionine Sulfoxide Reductase; Chain A › Peptide methionine sulphoxide reductase MsrA | 0.50 | 43.0 | 3.18e-01 | 100.0% | 62.2% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3675227 | 4076.1.1.2 ↗ | a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Cauli_VI | 0.96 | 74.0 | 8.01e-01 | 79.7% | 94.0% |
| 4000195 | 4076.1.1.2 ↗ | a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Cauli_VI | 0.92 | 69.0 | 7.49e-01 | 79.7% | 94.0% |
| 3177414 | 4076.1.1.2 ↗ | a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Cauli_VI | 0.88 | 64.0 | 6.88e-01 | 76.3% | 96.0% |
| 338289 | 4076.1.1.2 ↗ | a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Cauli_VI | 0.88 | 65.0 | 6.96e-01 | 79.7% | 92.0% |
| 3208026 | 4076.1.1.2 ↗ | a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Cauli_VI | 0.85 | 66.0 | 6.28e-01 | 83.1% | 71.0% |
| 3467232 | 4076.1.1.0 ↗ | a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like | 0.81 | 72.0 | 6.83e-01 | 100.0% | 82.9% |
| 3862518 | 4076.1.1.2 ↗ | a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Cauli_VI | 0.72 | 56.0 | 5.76e-01 | 83.1% | 100.0% |
| 4186535 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.66 | 55.0 | 4.60e-01 | 93.2% | 100.0% |
| 3502237 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.64 | 49.0 | 3.18e-01 | 88.1% | 43.8% |
| 3511091 | 220.1.1.145 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RASGAP | 0.62 | 47.0 | 4.71e-01 | 79.7% | 88.3% |
| 4024270 | 4263.2.1.1 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext | 0.62 | 52.0 | 4.81e-01 | 98.3% | 92.5% |
| 3656282 | 7588.1.1.0 ↗ | a/b three-layered sandwiches › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase | 0.59 | 39.0 | 3.74e-01 | 76.3% | 57.1% |
| 4668788 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.58 | 46.0 | 3.65e-01 | 91.5% | 73.9% |
| 5010295 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.58 | 46.0 | 3.13e-01 | 86.4% | 74.8% |
| 1144832 | 2484.1.1.63 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF3822 | 0.57 | 45.0 | 3.86e-01 | 88.1% | 58.0% |
| 4031881 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.57 | 46.0 | 3.41e-01 | 93.2% | 75.4% |
| 4395723 | 2003.1.5.153 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT, Methyltransf_25 | 0.54 | 43.0 | 3.09e-01 | 96.6% | 56.7% |
| 4052313 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.54 | 43.0 | 3.64e-01 | 89.8% | 76.2% |
| 3855031 | 220.1.1.167 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PF29707 | 0.54 | 44.0 | 3.70e-01 | 96.6% | 66.4% |
| None | — | 0.53 | 42.0 | 2.77e-01 | 88.1% | 22.8% | |
| None | — | 0.52 | 39.0 | 2.94e-01 | 89.8% | 56.2% | |
| 4952918 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 39.0 | 3.51e-01 | 88.1% | 68.9% |
D2
high
residues 288-452