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inner_capsid_protein

Euk-Vir

Cangyuan_orthoreovirus

inner_capsid_protein__YP_009110698__Cangyuan_orthoreovirus__1388882

Identity

Accession:
YP_009110698 ↗
Protein ID:
inner_capsid_protein
Kingdom:
euk

Quality

46.3 mean pLDDT

Taxonomy

Orthornavirae› Duplornaviricota› Resentoviricetes› Reovirales› Spinareoviridae› Orthoreovirus› Cangyuan_orthoreovirus

TaxID: 1388882

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 628-824
PDB
D2 medium residues 979-1041
PDB
D3 medium residues 1042-1065_1123-1237
PDB
D4 medium residues 1066-1122
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF22033.2 best Lamba1_VP3 61.8 4.30e-17 100.0% 6.0%
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ej6B00 3.90.1830.10 Alpha Beta › Alpha-Beta Complex › Inner capsid protein lambda-1 › Inner capsid protein lambda-1 0.91 84.0 4.48e-01 100.0% 5.5%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 46.0 4.38e-01 73.7% 80.6%
4fnfA00 2.40.50.50 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 45.0 3.88e-01 82.5% 95.9%
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.58 42.0 3.61e-01 78.9% 93.9%
4bpnW02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.57 38.0 4.03e-01 70.2% 100.0%
2bi0A01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.57 38.0 2.88e-01 70.2% 86.3%
2epbA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 39.0 3.77e-01 77.2% 83.8%
1vq8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 38.0 3.46e-01 71.9% 56.4%
2ra9A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.54 39.0 3.73e-01 82.5% 80.8%
4wfsA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 41.0 2.89e-01 89.5% 37.4%
2x8nA01 3.30.2020.40 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 0.53 40.0 3.44e-01 86.0% 71.1%
1r8oB01 2.30.30.480 Mainly Beta › Roll › SH3 type barrels. › 0.51 36.0 3.51e-01 75.4% 86.4%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4881251 4064.1.1.7 ↗ a+b complex topology › Inner layer core protein p3-related › Inner layer core protein p3-related › Inner layer core protein p3-related › Lamba1_VP3 0.90 82.0 4.45e-01 100.0% 7.2%
2992478 4064.1.1.7 ↗ a+b complex topology › Inner layer core protein p3-related › Inner layer core protein p3-related › Inner layer core protein p3-related › Lamba1_VP3 0.88 81.0 4.33e-01 100.0% 5.3%
4937702 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.59 41.0 3.18e-01 73.7% 71.9%
2453130 702.1.1.4 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack 0.58 37.0 2.51e-01 89.5% 15.2%
3406792 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 39.0 3.65e-01 70.2% 58.6%
3793797 5.1.5.93 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_EMC1_N 0.58 41.0 2.57e-01 75.4% 83.7%
4964971 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 38.0 2.64e-01 73.7% 47.0%
4982943 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 43.0 3.41e-01 93.0% 80.7%
2723695 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 34.0 3.72e-01 78.9% 80.0%
3929373 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.55 35.0 3.48e-01 71.9% 61.7%
3326962 3794.1.1.3 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › ACCA_BT 0.54 37.0 2.89e-01 71.9% 98.5%
5078989 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.54 41.0 3.32e-01 91.2% 89.6%
3328891 4.1.1.296 ↗ beta barrels › SH3 › SH3 › SH3 › TDBD 0.53 43.0 4.13e-01 87.7% 86.2%
3906429 7.1.1.10 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 0.53 36.0 3.14e-01 71.9% 75.8%
3267345 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.53 36.0 3.73e-01 78.9% 76.4%
3176989 601.19.1.40 ↗ alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › PF28954 0.53 38.0 2.91e-01 82.5% 69.4%
3556735 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.52 36.0 3.42e-01 73.7% 67.1%
3517845 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.52 38.0 3.17e-01 80.7% 81.9%
4850056 2.2.1.5 ↗ beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins › LT-IIB 0.52 37.0 3.89e-01 80.7% 90.4%
4935165 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.51 38.0 2.77e-01 87.7% 90.0%
5014636 309.1.2.1 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain › tRNA_SAD 0.51 39.0 3.12e-01 87.7% 52.3%
3653284 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.51 41.0 3.52e-01 100.0% 88.6%
4526481 7575.1.1.2 ↗ a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C25 0.51 40.0 2.97e-01 98.2% 61.6%
None — 0.50 39.0 2.59e-01 98.2% 65.4%