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integrase

Euk-Vir

Human_immunodeficiency_virus_1

integrase__NP_705928__Human_immunodeficiency_virus_1__11676

Identity

Accession:
NP_705928 ↗
Protein ID:
integrase
Kingdom:
euk

Quality

81.5 mean pLDDT

Taxonomy

Pararnavirae› Artverviricota› Revtraviricetes› Ortervirales› Retroviridae› Lentivirus› Human_immunodeficiency_virus_1

TaxID: 11676

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-39
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02022.26 best Integrase_Zn 49.8 3.90e-13 82.0% 84.2%
CATH (79)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1k6yA01 1.10.10.200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain 0.89 82.0 7.72e-01 100.0% 84.8%
3dteA02 1.10.10.1030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › IrrE, HTH domain 0.83 64.0 6.31e-01 84.6% 95.1%
7z7vE01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.80 63.0 5.65e-01 94.9% 75.0%
3f8mA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 64.0 5.48e-01 94.9% 70.8%
3tgnB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 61.0 5.19e-01 89.7% 60.3%
2j5oA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 61.0 5.19e-01 94.9% 58.5%
2cobA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.73 61.0 5.94e-01 100.0% 95.5%
2vxzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 60.0 5.05e-01 92.3% 60.6%
2x26A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.73 55.0 3.56e-01 84.6% 73.0%
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.73 53.0 4.52e-01 79.5% 53.8%
2da3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 57.0 5.56e-01 97.4% 91.5%
2kt0A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 54.0 5.21e-01 87.2% 93.6%
1rr7A02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.71 55.0 5.26e-01 89.7% 72.9%
4a0zA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 57.0 5.10e-01 94.9% 69.5%
2dbbB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 53.0 4.90e-01 87.2% 70.9%
3gw2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 56.0 4.28e-01 89.7% 39.8%
3g3zA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 59.0 5.01e-01 94.9% 60.9%
3cuqB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 55.0 4.58e-01 87.2% 53.6%
2jt1A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 55.0 4.58e-01 89.7% 62.0%
3cuoD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 58.0 4.42e-01 94.9% 40.4%
2ethA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 53.0 3.70e-01 87.2% 27.0%
4ha8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 54.0 4.74e-01 89.7% 65.1%
2f2cA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.70 53.0 4.01e-01 89.7% 46.2%
1jhgA00 1.10.1270.10 Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like 0.70 55.0 4.30e-01 100.0% 41.6%
1g3nC01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.69 55.0 3.99e-01 94.9% 80.8%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 54.0 3.72e-01 89.7% 27.5%
2r0qC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 56.0 5.14e-01 97.4% 87.3%
2xubA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 55.0 4.54e-01 94.9% 48.7%
1aisB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.69 54.0 4.28e-01 97.4% 44.7%
1on2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 52.0 4.38e-01 87.2% 56.9%
3oopA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 53.0 3.75e-01 89.7% 28.4%
2k9lA00 1.10.10.1330 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RNA polymerase sigma-54 factor, core-binding domain 0.68 56.0 4.63e-01 97.4% 56.6%
4kmfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 56.0 4.87e-01 94.9% 66.1%
2a6cA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.68 51.0 4.20e-01 84.6% 47.4%
3bddD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 56.0 3.91e-01 94.9% 40.2%
1z05A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 55.0 4.66e-01 97.4% 58.3%
3bj6B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 56.0 3.78e-01 94.9% 34.4%
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 55.0 4.75e-01 97.4% 61.2%
2da7A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 52.0 4.53e-01 94.9% 60.6%
2llkA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 52.0 5.19e-01 94.9% 97.6%
2ia0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 54.0 5.02e-01 97.4% 75.9%
2x48A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 53.0 4.95e-01 100.0% 70.4%
2dk5A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 54.0 4.72e-01 97.4% 62.1%
1lj9B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 55.0 3.78e-01 94.9% 39.4%
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 55.0 5.00e-01 97.4% 69.6%
2m8gX00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 50.0 4.26e-01 87.2% 57.1%
2zkzC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 52.0 4.16e-01 92.3% 43.7%
1hw1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 54.0 4.51e-01 97.4% 65.3%
2cfxA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 54.0 5.08e-01 97.4% 82.0%
2rn7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 49.0 4.49e-01 97.4% 74.2%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.66 53.0 3.81e-01 100.0% 79.7%
4kibA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 50.0 3.89e-01 89.7% 39.4%
7l1iA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 53.0 3.61e-01 94.9% 34.0%
4u7bA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 49.0 4.94e-01 87.2% 94.9%
3s2wG00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 53.0 3.75e-01 94.9% 42.1%
2vqcA00 1.10.10.1470 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › F-112 protein-like 0.65 53.0 4.52e-01 97.4% 61.4%
1r71A01 1.10.10.730 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › KorB DNA-binding domain 0.65 52.0 4.75e-01 97.4% 80.4%
3h4cA02 1.10.472.110 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › 0.65 50.0 3.83e-01 97.4% 43.6%
5f7qC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 52.0 4.47e-01 97.4% 61.4%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.65 50.0 3.92e-01 97.4% 44.7%
1b72A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 53.0 4.63e-01 100.0% 67.6%
4wcgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 53.0 4.70e-01 97.4% 67.2%
1c9bA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.65 50.0 3.87e-01 97.4% 63.2%
2hinA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.64 45.0 3.94e-01 76.9% 51.5%
2mgqA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 51.0 4.46e-01 100.0% 73.5%
2mw8A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 52.0 4.56e-01 100.0% 71.6%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 50.0 4.47e-01 97.4% 63.5%
3onqA03 1.10.10.2840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain 0.64 50.0 3.61e-01 94.9% 35.1%
3r4kB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 51.0 4.50e-01 97.4% 66.7%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.63 50.0 4.20e-01 100.0% 74.7%
3cdlA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 49.0 4.58e-01 97.4% 90.7%
3mvpA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 47.0 4.57e-01 94.9% 97.9%
1fc3B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 46.0 3.69e-01 100.0% 70.3%
5fgmA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 46.0 4.08e-01 94.9% 60.0%
2x1dA02 1.10.10.2120 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.59 48.0 3.96e-01 94.9% 90.5%
1l0oC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 45.0 4.10e-01 89.7% 80.7%
1xwyA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.58 44.0 2.74e-01 92.3% 23.1%
1ojlA03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.57 44.0 4.27e-01 94.9% 83.0%
4d3dB02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.52 38.0 2.78e-01 87.2% 58.1%
ECOD (79)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3452941 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 61.0 5.78e-01 97.4% 84.0%
3404418 101.1.1.24 ↗ alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.75 64.0 5.35e-01 100.0% 61.4%
3574083 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.74 57.0 5.52e-01 89.7% 97.8%
3593689 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 58.0 5.11e-01 89.7% 68.3%
5007183 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 61.0 5.90e-01 97.4% 86.7%
3283273 101.1.2.112 ↗ alpha arrays › HTH › HTH › winged helix domain › FtsK_gamma 0.74 61.0 4.86e-01 94.9% 47.5%
3567273 101.1.1.35 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_psq 0.73 60.0 5.84e-01 100.0% 93.3%
3998880 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 60.0 4.63e-01 100.0% 44.2%
3738604 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 62.0 4.53e-01 97.4% 41.9%
3262509 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 59.0 4.70e-01 100.0% 53.3%
5051680 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.72 59.0 4.80e-01 97.4% 53.8%
5027752 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 59.0 4.85e-01 100.0% 53.8%
3239905 101.1.1.35 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_psq 0.72 59.0 4.77e-01 100.0% 49.4%
3784774 101.1.1.35 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_psq 0.72 59.0 5.32e-01 100.0% 66.7%
1175650 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.72 58.0 4.56e-01 89.7% 47.6%
4985590 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.72 56.0 5.67e-01 94.9% 95.0%
5070906 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 58.0 5.18e-01 97.4% 70.0%
3958096 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 57.0 4.40e-01 89.7% 42.2%
3793393 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 59.0 4.83e-01 100.0% 52.5%
3926525 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.71 59.0 5.87e-01 100.0% 100.0%
5072014 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.71 56.0 4.69e-01 94.9% 56.0%
5078207 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 57.0 5.35e-01 100.0% 81.5%
3620215 101.1.1.35 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_psq 0.71 57.0 3.77e-01 100.0% 21.1%
4009872 101.1.1.63 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.71 58.0 5.15e-01 97.4% 65.0%
3997733 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 57.0 5.01e-01 97.4% 61.5%
3786618 101.1.1.201 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Bot1p 0.70 57.0 4.10e-01 97.4% 33.9%
4391758 101.1.6.1 ↗ alpha arrays › HTH › HTH › TrpR › Trp_repressor 0.70 56.0 4.43e-01 100.0% 42.1%
3960825 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.70 55.0 3.75e-01 89.7% 26.0%
5074942 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.70 55.0 4.62e-01 94.9% 56.0%
5030639 7523.1.1.27 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › NMT1_2 0.70 54.0 3.22e-01 87.2% 79.3%
4627768 101.1.2.786 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_1 0.70 52.0 5.19e-01 87.2% 100.0%
4970077 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.70 55.0 4.42e-01 89.7% 48.8%
5024511 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 56.0 5.36e-01 100.0% 84.0%
4032615 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.70 55.0 3.77e-01 89.7% 27.3%
5050883 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 56.0 4.19e-01 100.0% 72.2%
3989075 101.1.3.11 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_Tnp_ISL3 0.69 55.0 5.58e-01 97.4% 100.0%
5014584 101.1.2.932 ↗ alpha arrays › HTH › HTH › winged helix domain › wHTH-PRTase_assc 0.69 54.0 4.38e-01 94.9% 47.1%
3793383 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.69 56.0 4.92e-01 100.0% 64.6%
3985633 101.1.1.13 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.69 57.0 5.23e-01 100.0% 76.4%
3908686 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 56.0 4.25e-01 100.0% 38.1%
4944661 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.68 55.0 5.10e-01 100.0% 76.4%
3913655 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.68 54.0 4.49e-01 97.4% 52.5%
4971829 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.68 52.0 4.38e-01 87.2% 54.3%
4982913 101.1.2.222 ↗ alpha arrays › HTH › HTH › winged helix domain › PH0730-like_N 0.68 55.0 4.12e-01 97.4% 38.2%
4460997 101.1.1.63 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.68 53.0 5.19e-01 94.9% 86.7%
5019935 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.68 55.0 4.80e-01 97.4% 63.1%
3243454 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.68 54.0 4.93e-01 100.0% 76.7%
5003077 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.68 56.0 4.71e-01 97.4% 62.9%
3590753 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.68 55.0 5.25e-01 100.0% 80.0%
3586837 101.1.1.17 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.68 54.0 5.15e-01 97.4% 84.0%
5039088 101.1.2.110 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.67 56.0 3.85e-01 97.4% 27.6%
139963 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 53.0 4.95e-01 100.0% 70.4%
3231816 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.67 55.0 4.94e-01 100.0% 76.7%
5013438 101.1.2.881 ↗ alpha arrays › HTH › HTH › winged helix domain › UPF0175 0.67 51.0 4.69e-01 94.9% 70.0%
3941182 101.1.1.52 ↗ alpha arrays › HTH › HTH › Three-helical HTH › BrkDBD 0.67 54.0 4.76e-01 100.0% 66.2%
4944760 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 54.0 4.86e-01 100.0% 71.7%
3759994 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 51.0 4.78e-01 94.9% 74.5%
5077992 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 54.0 4.53e-01 97.4% 54.7%
3365751 101.1.1.253 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_CLF_N 0.67 55.0 4.81e-01 100.0% 76.9%
4994133 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.67 52.0 4.25e-01 97.4% 50.6%
4939633 101.1.2.932 ↗ alpha arrays › HTH › HTH › winged helix domain › wHTH-PRTase_assc 0.67 53.0 4.73e-01 97.4% 63.5%
5060354 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 54.0 4.72e-01 97.4% 63.1%
3669646 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.66 54.0 4.99e-01 100.0% 85.5%
4945289 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 53.0 4.79e-01 100.0% 71.7%
4142269 101.1.1.2 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.65 52.0 4.82e-01 97.4% 92.7%
4214638 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 52.0 4.84e-01 100.0% 81.8%
4293871 101.1.1.62 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_24 0.65 52.0 4.84e-01 100.0% 74.5%
3955641 101.1.2.734 ↗ alpha arrays › HTH › HTH › winged helix domain › AbiEi_2 0.65 52.0 4.28e-01 100.0% 50.6%
4967777 101.1.2.222 ↗ alpha arrays › HTH › HTH › winged helix domain › PH0730-like_N 0.65 51.0 4.20e-01 100.0% 55.3%
4987624 102.1.1.119 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DUF4332 0.64 51.0 4.29e-01 97.4% 65.3%
3967091 101.1.1.13 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.63 51.0 4.60e-01 100.0% 71.7%
3834548 101.1.3.12 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › PF26138 0.63 49.0 4.41e-01 100.0% 66.2%
4606821 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.63 50.0 3.91e-01 100.0% 47.0%
3953113 101.1.2.246 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_PafC 0.63 50.0 3.65e-01 100.0% 51.5%
4929413 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.62 49.0 4.02e-01 97.4% 48.2%
3256356 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.62 48.0 4.29e-01 94.9% 60.9%
5013090 304.4.1.83 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › HTH_24 0.62 48.0 3.31e-01 97.4% 22.8%
4955811 101.1.2.222 ↗ alpha arrays › HTH › HTH › winged helix domain › PH0730-like_N 0.62 49.0 3.96e-01 100.0% 46.7%
3984815 101.1.1.13 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.61 47.0 4.44e-01 100.0% 87.3%
D2 medium residues 60-187
PDB
Domain cluster: rep: AB916497.1__BAS32805.1__X__00007__D17-171
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00665.33 best rve 56.0 5.90e-15 67.2% 94.1%