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integrase
Euk-VirPenaeus_monodon_nudivirus
integrase__YP_009051893__Penaeus_monodon_nudivirus__1529056
Identity
- Accession:
- YP_009051893 ↗
- Protein ID:
- integrase
- Kingdom:
- euk
Quality
75.3
mean pLDDT
Taxonomy
TaxID: 1529056
Cluster
View cluster (6 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 20-90
Domain cluster:
rep: integrase__YP_010087682__Homarus_gammarus_nudivirus__2509616__D30-92
D2
medium
residues 104-272
Domain cluster:
rep: MK448963.1__QBX29522.1__Javan498_0048__00001__D46-231
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00589.28 best | Phage_integrase | 53.5 | 3.50e-14 | 100.0% | 92.4% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5jk0B01 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.78 | 74.0 | 7.38e-01 | 100.0% | 97.1% |
| 1f44A01 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.78 | 74.0 | 7.03e-01 | 100.0% | 94.3% |
| 2a3vA02 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.77 | 73.0 | 6.74e-01 | 100.0% | 94.3% |
| 1ae9A00 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.74 | 65.0 | 6.51e-01 | 94.7% | 90.6% |
| 3nkhA00 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.74 | 69.0 | 6.27e-01 | 100.0% | 89.1% |
| 2v6eA03 | 1.10.443.30 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Telomere resolvase | 0.65 | 60.0 | 5.43e-01 | 100.0% | 86.2% |
| 4qqwA01 | 1.10.3210.30 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › | 0.55 | 39.0 | 3.50e-01 | 72.8% | 85.0% |
| 2obpA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 24.0 | 3.28e-01 | 75.1% | 90.1% |
| 5e1wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 40.0 | 4.09e-01 | 97.6% | 87.5% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5076857 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.83 | 73.0 | 7.21e-01 | 100.0% | 88.6% |
| 4973226 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.82 | 56.0 | 6.65e-01 | 80.5% | 98.3% |
| 5059725 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.80 | 72.0 | 7.02e-01 | 100.0% | 88.3% |
| 5035582 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.79 | 53.0 | 6.35e-01 | 77.5% | 100.0% |
| 4999495 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.78 | 70.0 | 6.83e-01 | 97.6% | 87.2% |
| 4475168 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.78 | 74.0 | 7.01e-01 | 100.0% | 86.2% |
| 4181053 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.77 | 74.0 | 6.93e-01 | 100.0% | 87.0% |
| 4975762 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.77 | 54.0 | 6.26e-01 | 75.1% | 96.0% |
| 5016957 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.77 | 72.0 | 7.19e-01 | 100.0% | 100.0% |
| 4004483 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.77 | 72.0 | 6.94e-01 | 100.0% | 88.4% |
| 4473331 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.76 | 57.0 | 5.92e-01 | 75.7% | 94.2% |
| 3942169 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.76 | 53.0 | 6.06e-01 | 76.3% | 95.2% |
| 4153666 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.76 | 55.0 | 6.16e-01 | 78.1% | 93.3% |
| 4387164 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.75 | 56.0 | 6.31e-01 | 77.5% | 98.5% |
| 4031846 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.75 | 54.0 | 6.27e-01 | 75.7% | 100.0% |
| 4112553 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.75 | 56.0 | 6.01e-01 | 76.3% | 91.7% |
| 4093657 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.75 | 54.0 | 6.01e-01 | 75.7% | 91.9% |
| 3979114 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.75 | 56.0 | 6.27e-01 | 91.1% | 99.2% |
| 5083877 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.75 | 53.0 | 5.93e-01 | 78.1% | 91.1% |
| 4261355 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.75 | 54.0 | 5.91e-01 | 74.0% | 92.9% |
| 4580960 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.74 | 55.0 | 5.98e-01 | 76.3% | 91.4% |
| 4313957 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.74 | 56.0 | 6.19e-01 | 77.5% | 99.3% |
| 4043462 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.74 | 52.0 | 6.09e-01 | 74.6% | 100.0% |
| 4032881 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.74 | 53.0 | 5.96e-01 | 77.5% | 92.6% |
| 4278298 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.73 | 54.0 | 6.05e-01 | 77.5% | 94.8% |
| 4338286 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.73 | 53.0 | 5.95e-01 | 78.1% | 93.3% |
| 5082761 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.73 | 53.0 | 6.07e-01 | 75.1% | 100.0% |
| 4463631 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.73 | 55.0 | 6.12e-01 | 78.1% | 97.8% |
| 3590354 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.73 | 54.0 | 6.03e-01 | 78.1% | 96.3% |
| 4929009 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.72 | 54.0 | 6.12e-01 | 77.5% | 99.2% |
| 4253165 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.72 | 53.0 | 5.82e-01 | 75.1% | 92.1% |
| 4053930 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.72 | 55.0 | 5.79e-01 | 78.1% | 98.7% |
| 4180367 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.72 | 55.0 | 5.59e-01 | 78.7% | 93.9% |
| 3964227 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.72 | 51.0 | 5.81e-01 | 75.7% | 95.4% |
| 4095013 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.71 | 54.0 | 5.96e-01 | 78.7% | 97.8% |
| 4028841 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.71 | 52.0 | 5.83e-01 | 75.7% | 99.3% |
| 4004713 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.70 | 52.0 | 5.75e-01 | 88.2% | 95.6% |
| 4962166 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.69 | 61.0 | 5.90e-01 | 92.9% | 94.6% |