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intein

Euk-Vir

Cafeteria_roenbergensis_virus_BV-PW1

intein__YP_003970178__Cafeteria_roenbergensis_virus_BV-PW1__693272

Identity

Accession:
YP_003970178 ↗
Protein ID:
intein
Kingdom:
euk

Quality

72.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-46_119-146
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6zgqA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.85 78.0 6.04e-01 97.3% 100.0%
2lwyA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.82 76.0 6.03e-01 100.0% 97.1%
1at0A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.80 74.0 5.82e-01 100.0% 99.3%
2imzA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.78 70.0 5.55e-01 97.3% 100.0%
1mi8A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.77 71.0 5.62e-01 100.0% 97.2%
2vseA04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.61 43.0 3.50e-01 94.6% 38.5%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 39.0 4.30e-01 91.9% 92.9%
1nunA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 45.0 3.84e-01 95.9% 80.6%
2kr7A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.55 33.0 3.64e-01 75.7% 75.4%
2fdbN00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 44.0 3.67e-01 95.9% 74.3%
1sr4A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 42.0 3.31e-01 100.0% 38.3%
3ne5B01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.53 38.0 3.72e-01 93.2% 67.4%
6baoA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 37.0 3.12e-01 75.7% 62.9%
1lurA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 44.0 3.01e-01 98.6% 95.7%
6pxcA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 39.0 3.63e-01 86.5% 98.1%
3hx8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 35.0 3.01e-01 71.6% 91.4%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 41.0 3.82e-01 100.0% 69.8%
4ku0D00 2.60.200.60 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.50 37.0 3.50e-01 81.1% 92.7%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2675767 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.85 80.0 6.08e-01 100.0% 96.8%
3963364 69.1.1.3 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › PT-HINT 0.85 79.0 6.16e-01 100.0% 98.6%
4950409 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.84 79.0 6.02e-01 100.0% 95.5%
4045174 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.84 79.0 5.91e-01 100.0% 97.0%
5065932 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.83 78.0 6.13e-01 100.0% 98.6%
259963 69.1.1.3 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › PT-HINT 0.82 76.0 6.03e-01 100.0% 97.1%
3517362 69.1.1.1 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.81 76.0 5.89e-01 98.6% 97.9%
3861422 69.1.1.1 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.81 77.0 5.47e-01 100.0% 75.8%
4600944 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.81 76.0 5.55e-01 100.0% 81.1%
4487998 69.1.1.1 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.81 76.0 5.55e-01 100.0% 81.1%
4070999 69.1.1.1 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.80 74.0 5.68e-01 100.0% 92.9%
5035476 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.80 74.0 5.63e-01 100.0% 97.5%
4500960 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.80 73.0 5.70e-01 98.6% 100.0%
5032319 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.79 74.0 5.72e-01 100.0% 99.3%
4243055 69.1.1.1 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.79 74.0 5.26e-01 100.0% 72.8%
3949584 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.79 72.0 5.59e-01 98.6% 99.3%
4997597 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.79 73.0 5.66e-01 100.0% 97.3%
5030847 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.78 72.0 5.49e-01 100.0% 93.1%
5012699 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.78 73.0 5.40e-01 100.0% 100.0%
5035795 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.78 71.0 5.63e-01 100.0% 97.9%
3518586 69.1.1.1 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.78 72.0 5.09e-01 100.0% 70.2%
3952464 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.77 71.0 5.61e-01 100.0% 93.8%
2445477 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.77 71.0 5.49e-01 100.0% 90.3%
5037092 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.77 64.0 6.55e-01 97.3% 92.9%
4975971 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.77 68.0 5.58e-01 95.9% 99.2%
2701967 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.77 70.0 5.66e-01 100.0% 99.3%
4979989 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.77 72.0 5.24e-01 100.0% 96.7%
4932851 69.1.1.1 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.76 71.0 5.67e-01 100.0% 97.0%
3603108 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.76 70.0 5.53e-01 100.0% 97.2%
4404140 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.69 63.0 4.73e-01 100.0% 96.6%
5004368 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.66 40.0 4.46e-01 75.7% 80.0%
4940699 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.65 59.0 4.56e-01 100.0% 47.1%
5064515 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.61 37.0 3.97e-01 75.7% 73.3%
3839955 284.1.1.0 a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.58 34.0 3.78e-01 74.3% 76.4%
5012286 284.4.1.1 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › FKBP26_IF 0.57 35.0 3.82e-01 75.7% 76.7%
3464866 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.56 44.0 3.56e-01 87.8% 78.0%
3885203 6.1.1.1 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › FGF 0.55 45.0 3.70e-01 95.9% 75.3%
3511278 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 41.0 4.25e-01 82.4% 88.6%
3395185 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.54 43.0 3.18e-01 89.2% 64.7%
5082324 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.52 38.0 2.51e-01 77.0% 19.7%
3410798 6.1.1.1 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › FGF 0.50 42.0 3.40e-01 94.6% 64.1%
D2 medium residues 47-118
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6zgqA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.82 75.0 5.85e-01 100.0% 53.1%
6vgwA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.81 66.0 5.20e-01 100.0% 44.7%
2jmzA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.79 71.0 5.35e-01 100.0% 42.3%
1dq3A01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.79 72.0 5.34e-01 100.0% 44.6%
1at0A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.78 71.0 5.59e-01 100.0% 53.1%
2cw8A01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.78 71.0 5.33e-01 100.0% 43.2%
2lcjA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.78 71.0 5.16e-01 100.0% 50.3%
4e2tB00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.78 71.0 5.30e-01 100.0% 63.3%
1am2A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.77 70.0 5.15e-01 100.0% 59.1%
5o9iA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.74 66.0 5.01e-01 100.0% 46.2%
1b3qB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 32.0 3.28e-01 98.6% 50.0%
3pfnC02 2.60.200.30 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › Probable inorganic polyphosphate/atp-NAD kinase; domain 2 0.56 42.0 3.56e-01 86.1% 100.0%
2derA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 37.0 3.56e-01 70.8% 79.3%
1fx7B03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.50 38.0 3.70e-01 84.7% 73.8%
1rqgA02 2.170.220.10 Mainly Beta › Beta Complex › Methionyl-trna Synthetase; domain 2 › 0.50 42.0 3.41e-01 100.0% 90.3%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3604113 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.87 78.0 6.00e-01 100.0% 47.6%
4045174 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.85 79.0 5.87e-01 100.0% 54.5%
4500960 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.84 79.0 6.08e-01 100.0% 51.7%
4993581 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.83 77.0 5.67e-01 100.0% 52.9%
2675767 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.82 76.0 5.80e-01 100.0% 50.0%
5065932 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.82 72.0 5.64e-01 100.0% 47.9%
4941327 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.82 76.0 5.91e-01 100.0% 60.7%
5028299 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.82 72.0 5.54e-01 100.0% 44.5%
5029355 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.82 75.0 5.81e-01 100.0% 50.0%
4950409 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.81 75.0 5.73e-01 100.0% 50.3%
4996401 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.81 74.0 5.64e-01 100.0% 51.9%
4993927 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.80 74.0 5.70e-01 100.0% 60.0%
5052154 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.80 74.0 5.54e-01 100.0% 44.8%
5028788 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.80 72.0 5.68e-01 100.0% 50.0%
4170121 69.1.1.11 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › PT-HINT, Intein_splicing 0.80 72.0 5.36e-01 100.0% 41.8%
4975503 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.80 73.0 5.34e-01 100.0% 50.0%
164902 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.79 71.0 5.24e-01 100.0% 39.4%
5078549 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.79 72.0 5.44e-01 100.0% 44.4%
4600944 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.79 72.0 5.33e-01 100.0% 44.0%
4948016 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.79 66.0 5.11e-01 100.0% 43.3%
4487998 69.1.1.1 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.79 72.0 5.31e-01 100.0% 44.0%
4070999 69.1.1.1 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.79 71.0 5.50e-01 100.0% 49.7%
5030213 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.79 72.0 5.57e-01 100.0% 49.3%
4243055 69.1.1.1 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.79 71.0 5.14e-01 100.0% 39.5%
3517362 69.1.1.1 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.78 71.0 5.58e-01 100.0% 52.8%
5035795 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.78 71.0 5.55e-01 100.0% 49.7%
4946209 69.1.1.18 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › DNA_topoisoIV 0.78 70.0 5.01e-01 100.0% 70.7%
5023539 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.78 71.0 5.45e-01 100.0% 63.2%
4982797 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.77 70.0 5.53e-01 100.0% 51.0%
3949431 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.77 69.0 5.42e-01 100.0% 51.3%
4993813 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.76 70.0 5.32e-01 100.0% 45.0%
3934143 69.1.1.1 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.75 67.0 5.38e-01 100.0% 54.3%
3603291 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.74 65.0 4.89e-01 100.0% 40.0%
3602222 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.69 60.0 4.27e-01 100.0% 64.9%
2570480 3077.1.1.1 beta sandwiches › Heme-binding protein HmuY-related › Heme-binding protein HmuY-related › Heme-binding protein HmuY-related › HmuY 0.54 43.0 3.31e-01 91.7% 88.0%
5050253 2.10.1.1 beta barrels › OB-fold › CheW › CheW › CheW 0.54 47.0 3.74e-01 98.6% 68.7%
4988964 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.54 37.0 3.59e-01 72.2% 88.2%
4079564 2005.1.1.40 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1+tRNA-synt_1g 0.52 44.0 2.94e-01 100.0% 24.9%
4950861 2.10.1.1 beta barrels › OB-fold › CheW › CheW › CheW 0.51 44.0 3.54e-01 98.6% 66.5%