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intein

Euk-Vir

Cafeteria_roenbergensis_virus_BV-PW1

intein__YP_003970180__Cafeteria_roenbergensis_virus_BV-PW1__693272

Identity

Accession:: YP_003970180 ↗
Protein ID:: intein
Kingdom:: euk

Quality

74.9 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Imitervirales› Mimiviridae› Rheavirus› Cafeteria_roenbergensis_virus_BV-PW1

TaxID: 693272

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-70_359-386

PDB

Domain cluster: rep: NC_052663.1__YP_009987405.1__JR328_gp161__00196__D254-312_575-608

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05203.22 best	Hom_end_hint	41.7	1.90e-10	74.2%	32.5%

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1dfaA01	2.170.16.10	Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain	0.91	86.0	6.55e-01	100.0%	99.0%
6zgqA01	2.170.16.10	Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain	0.86	82.0	6.95e-01	100.0%	100.0%
2imzA00	2.170.16.10	Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain	0.86	81.0	6.96e-01	100.0%	100.0%
4e2tB00	2.170.16.10	Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain	0.86	80.0	6.52e-01	100.0%	98.8%
2lwyA00	2.170.16.10	Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain	0.85	81.0	7.03e-01	100.0%	96.4%
6vgwA01	2.170.16.10	Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain	0.84	79.0	6.88e-01	100.0%	97.2%
1at0A00	2.170.16.10	Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain	0.84	79.0	6.77e-01	100.0%	97.2%
6oqrA01	2.40.30.20	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 ›	0.53	36.0	3.76e-01	92.8%	75.6%
4fvmA02	3.30.70.2820	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.51	40.0	3.98e-01	100.0%	81.6%

ECOD (20)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3174953	69.1.1.2 ↗	beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hom_end_hint	0.91	87.0	6.33e-01	100.0%	99.6%
2546507	69.1.1.2 ↗	beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hom_end_hint	0.91	87.0	7.41e-01	100.0%	98.6%
4180552	69.1.1.0 ↗	beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint	0.90	86.0	6.99e-01	100.0%	98.8%
2553113	69.1.1.0 ↗	beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint	0.88	84.0	7.53e-01	100.0%	96.1%
4993732	69.1.1.0 ↗	beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint	0.88	84.0	7.56e-01	100.0%	95.2%
3963364	69.1.1.3 ↗	beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › PT-HINT	0.88	83.0	7.10e-01	100.0%	96.6%
5035476	69.1.1.4 ↗	beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing	0.87	83.0	6.82e-01	100.0%	96.9%
4274856	69.1.1.0 ↗	beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint	0.87	82.0	6.69e-01	100.0%	98.2%
4941327	69.1.1.0 ↗	beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint	0.86	75.0	6.41e-01	91.8%	97.9%
259963	69.1.1.3 ↗	beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › PT-HINT	0.85	81.0	7.03e-01	100.0%	96.4%
3602706	69.1.1.3 ↗	beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › PT-HINT	0.85	80.0	6.98e-01	100.0%	96.4%
4045174	69.1.1.0 ↗	beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint	0.84	79.0	6.44e-01	100.0%	95.8%
4979989	69.1.1.0 ↗	beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint	0.84	78.0	6.22e-01	100.0%	95.6%
5052154	69.1.1.0 ↗	beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint	0.83	77.0	6.35e-01	100.0%	98.2%
4971400	69.1.1.0 ↗	beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint	0.83	77.0	5.32e-01	100.0%	52.2%
4680886	69.1.1.14 ↗	beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint_2	0.82	76.0	6.28e-01	100.0%	97.6%
4934481	69.1.1.0 ↗	beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint	0.78	72.0	6.22e-01	100.0%	98.6%
4932851	69.1.1.1 ↗	beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint	0.71	65.0	5.77e-01	100.0%	94.8%
1758564	69.1.1.2 ↗	beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hom_end_hint	0.68	63.0	5.03e-01	97.9%	95.4%
3598222	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.58	33.0	3.83e-01	83.5%	78.6%

D2 high residues 76-166

PDB

D3 high residues 204-337

PDB

Domain cluster: rep: S16_GE16_scaffold_5545_prodigal-single.1__X__X__00213__D47-145

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05204.20 best	Hom_end	35.6	1.20e-08	73.9%	84.5%