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intein

Euk-Vir

Cafeteria_roenbergensis_virus_BV-PW1

intein__YP_003970184__Cafeteria_roenbergensis_virus_BV-PW1__693272

Identity

Accession:
YP_003970184 ↗
Protein ID:
intein
Kingdom:
euk

Quality

76.0 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Imitervirales› Mimiviridae› Rheavirus› Cafeteria_roenbergensis_virus_BV-PW1

TaxID: 693272

Cluster

View cluster (10 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-111_309-346
PDB
Domain cluster: rep: SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00388__D99-198_300-332
D2 high residues 127-227
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1jvaB02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.73 64.0 6.25e-01 100.0% 88.2%
3pxpA02 3.30.450.180 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.63 46.0 3.70e-01 77.2% 90.5%
5flmA02 3.30.1360.140 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.61 47.0 4.23e-01 80.2% 91.2%
5mmiU01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.61 45.0 4.95e-01 79.2% 98.8%
2n8lA00 3.30.310.210 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.61 42.0 3.43e-01 72.3% 72.8%
2jgtA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.60 45.0 4.00e-01 77.2% 56.0%
5w2fA01 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.60 42.0 4.53e-01 73.3% 100.0%
3wy7D01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.59 41.0 3.86e-01 70.3% 60.0%
2bwnB01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.59 43.0 3.72e-01 77.2% 48.4%
1fc4A02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.58 42.0 3.87e-01 77.2% 56.6%
1q5yC00 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.58 39.0 4.31e-01 70.3% 86.6%
2nrqA00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.58 40.0 3.69e-01 72.3% 76.6%
3akjA01 3.30.200.120 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.58 36.0 4.01e-01 75.2% 83.8%
2f1fA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.56 36.0 3.93e-01 93.1% 82.3%
3fkdA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.56 39.0 3.78e-01 76.2% 65.2%
3cueB00 3.30.1380.20 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 0.56 44.0 3.82e-01 87.1% 68.3%
3l8aA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.55 40.0 3.50e-01 76.2% 60.9%
2cpiA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 37.0 4.02e-01 72.3% 86.4%
3e8oB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 37.0 3.79e-01 70.3% 76.0%
2g0iA00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.54 40.0 3.90e-01 77.2% 95.5%
2khdA00 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 38.0 3.72e-01 72.3% 66.7%
2jvzA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.53 36.0 3.98e-01 72.3% 88.7%
1m1hA01 3.30.70.940 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain 0.53 37.0 3.76e-01 72.3% 75.0%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 41.0 4.02e-01 87.1% 80.9%
3pqvC01 3.65.10.20 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › RNA 3'-terminal phosphate cyclase domain 0.52 40.0 3.05e-01 84.2% 92.9%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 41.0 4.15e-01 91.1% 90.0%
2e7vA01 3.30.70.960 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SEA domain 0.51 36.0 3.56e-01 72.3% 89.5%
3venA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 40.0 3.09e-01 83.2% 69.3%
1r89A03 3.30.70.590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Poly(A) polymerase predicted RNA binding domain 0.51 35.0 3.26e-01 71.3% 65.7%
1x8dA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 35.0 3.61e-01 72.3% 88.7%
6khuA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.51 37.0 3.47e-01 78.2% 70.0%
3pieA02 3.30.1370.250 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.51 36.0 3.69e-01 76.2% 89.0%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.50 40.0 3.79e-01 86.1% 91.8%
3o4fH02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 36.0 2.84e-01 76.2% 39.4%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5032337 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.82 63.0 6.99e-01 90.1% 100.0%
4978365 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.81 62.0 6.92e-01 91.1% 100.0%
3603717 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.80 61.0 6.76e-01 92.1% 100.0%
5031915 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.80 64.0 6.89e-01 93.1% 100.0%
5027652 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.79 70.0 7.28e-01 95.0% 100.0%
3602707 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.79 74.0 7.06e-01 100.0% 97.4%
3603763 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.79 63.0 6.66e-01 92.1% 94.4%
3603294 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.79 66.0 6.97e-01 95.0% 100.0%
4998391 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.77 65.0 6.85e-01 94.1% 100.0%
4975576 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.77 64.0 6.80e-01 94.1% 100.0%
5065934 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.76 61.0 6.55e-01 87.1% 100.0%
5013983 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.76 71.0 6.65e-01 100.0% 96.7%
5066390 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.76 71.0 6.78e-01 100.0% 100.0%
5057183 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.75 61.0 6.31e-01 86.1% 93.7%
3602910 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.74 61.0 6.47e-01 98.0% 97.8%
4938000 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.74 59.0 6.08e-01 92.1% 88.4%
5028314 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.74 61.0 6.09e-01 93.1% 84.8%
4997777 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.74 58.0 6.25e-01 93.1% 98.8%
4412539 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.74 62.0 5.11e-01 90.1% 54.3%
4971395 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.73 60.0 6.24e-01 88.1% 92.6%
3602142 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.73 61.0 6.09e-01 90.1% 88.6%
4975577 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.73 62.0 5.10e-01 91.1% 52.6%
5012959 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.73 61.0 5.92e-01 90.1% 81.8%
4944480 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.73 66.0 6.47e-01 100.0% 98.2%
4553370 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.73 65.0 6.25e-01 98.0% 90.4%
4039974 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.72 66.0 6.31e-01 99.0% 93.9%
4993809 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.72 66.0 6.64e-01 100.0% 98.0%
4998402 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.72 63.0 6.47e-01 94.1% 100.0%
5028136 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.72 61.0 5.83e-01 90.1% 86.1%
5012702 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.72 61.0 5.81e-01 90.1% 86.1%
4933755 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.72 66.0 6.10e-01 99.0% 87.2%
5012958 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.70 64.0 5.84e-01 98.0% 96.2%
3290652 306.2.1.0 ↗ a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor 0.70 58.0 6.04e-01 91.1% 100.0%
5041224 306.2.1.0 ↗ a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor 0.69 54.0 5.78e-01 85.1% 100.0%
4075546 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.69 50.0 5.25e-01 75.2% 84.4%
5054002 305.1.1.2 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 0.68 42.0 4.65e-01 72.3% 77.5%
4572272 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.68 58.0 5.51e-01 93.1% 95.8%
4273759 305.1.1.2 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 0.67 44.0 4.48e-01 71.3% 67.7%
136198 305.1.1.2 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 0.62 41.0 3.88e-01 70.3% 57.1%
3521944 327.11.2.26 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_N4BP1_1st 0.61 40.0 4.60e-01 71.3% 94.3%
1954213 241.1.1.6 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › YbjN 0.61 43.0 3.89e-01 74.3% 66.2%
4999609 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.61 42.0 3.03e-01 71.3% 34.6%
4014672 3016.1.1.1 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 0.60 47.0 4.15e-01 84.2% 82.7%
5045726 304.162.1.0 ↗ a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain 0.60 41.0 4.55e-01 70.3% 92.5%
3858621 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.60 41.0 4.58e-01 72.3% 90.0%
3427796 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.60 40.0 4.25e-01 71.3% 76.7%
271678 304.4.1.9 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Chlor_dismutase 0.59 40.0 3.71e-01 70.3% 78.9%
3477897 304.44.1.0 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 0.58 39.0 4.08e-01 93.1% 75.6%
3831436 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.58 39.0 4.28e-01 72.3% 87.5%
4999540 873.1.1.13 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › ATC_hydrolase 0.58 43.0 3.78e-01 77.2% 70.0%
4997832 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.58 43.0 3.14e-01 79.2% 36.9%
3225101 304.44.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 0.57 38.0 3.61e-01 92.1% 56.0%
4280669 304.4.1.9 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Chlor_dismutase 0.56 38.0 3.47e-01 70.3% 82.1%
5044085 3016.1.1.1 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 0.56 39.0 4.26e-01 72.3% 92.5%
5023169 304.120.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.56 37.0 4.21e-01 71.3% 93.3%
3998431 306.3.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.55 40.0 3.91e-01 75.2% 80.0%
2512800 304.4.1.9 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Chlor_dismutase 0.55 37.0 3.44e-01 70.3% 83.9%
3329729 5104.1.1.3 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA2 0.54 41.0 3.70e-01 81.2% 83.4%
3968643 241.1.1.8 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › DUF2170 0.54 38.0 3.48e-01 72.3% 65.2%
3683636 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.53 36.0 3.98e-01 73.3% 93.5%
3171046 320.4.1.0 ↗ a+b two layers › R3H domain-like › PUB domain › PUB domain 0.52 43.0 3.68e-01 94.1% 90.3%
4173782 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.52 42.0 4.12e-01 93.1% 87.0%
3693867 2003.1.5.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.51 39.0 2.95e-01 80.2% 40.4%
5011183 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.51 41.0 4.07e-01 92.1% 89.1%
3969012 101.1.2.485 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF2513 0.50 40.0 4.28e-01 88.1% 97.8%
4951832 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.50 43.0 3.71e-01 93.1% 72.3%
D3 high residues 237-305
PDB