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intermediate_transcription_factor_VITF-3
Euk-VirNile_crocodilepox_virus
intermediate_transcription_factor_VITF-3__YP_784319__Nile_crocodilepox_virus__1285600
Identity
- Accession:
- YP_784319 ↗
- Protein ID:
- intermediate_transcription_factor_VITF-3
- Kingdom:
- euk
Quality
74.9
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Pokkesviricetes›
Chitovirales›
Poxviridae›
Crocodylidpoxvirus›
Nile_crocodilepox_virus
TaxID: 1285600
Cluster
View cluster (28 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 182-291
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04745.18 best | Pox_A8 | 43.3 | 3.50e-11 | 96.4% | 31.5% |
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6b04C00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.60 | 54.0 | 3.84e-01 | 100.0% | 63.0% |
| 1yhlA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.60 | 53.0 | 3.74e-01 | 100.0% | 64.1% |
| 4kk2B00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.57 | 51.0 | 3.64e-01 | 99.1% | 48.8% |
| 2a7oA00 | 1.10.1740.100 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Set2, Rpb1 interacting domain | 0.56 | 38.0 | 3.97e-01 | 95.5% | 77.0% |
| 5ux1D00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.54 | 48.0 | 4.00e-01 | 98.2% | 85.8% |
| 3h36A00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.54 | 31.0 | 3.57e-01 | 75.5% | 75.6% |
| 4i8qA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.54 | 45.0 | 3.36e-01 | 93.6% | 78.1% |
| 1t33A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.53 | 38.0 | 3.31e-01 | 93.6% | 50.6% |
| 3lcnB00 | 1.10.340.40 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain | 0.53 | 33.0 | 3.47e-01 | 81.8% | 70.1% |
| 1u61A00 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.52 | 46.0 | 4.43e-01 | 97.3% | 92.1% |
| 3kflA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.52 | 43.0 | 3.70e-01 | 89.1% | 85.1% |
| 3ppbA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 38.0 | 3.20e-01 | 75.5% | 58.5% |
| 4rflA02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.52 | 45.0 | 3.80e-01 | 99.1% | 86.4% |
| 2qe9B01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.52 | 37.0 | 3.29e-01 | 74.5% | 91.8% |
| 2lquA01 | 1.20.1420.40 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Decorin-binding protein | 0.51 | 38.0 | 3.41e-01 | 79.1% | 84.4% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3700820 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.80 | 42.0 | 4.66e-01 | 85.5% | 63.3% |
| 5007869 | 601.33.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain | 0.63 | 41.0 | 4.35e-01 | 82.7% | 74.0% |
| 3916954 | 621.1.1.0 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 0.63 | 48.0 | 4.44e-01 | 82.7% | 84.1% |
| 3462254 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.61 | 49.0 | 4.02e-01 | 85.5% | 82.5% |
| 3734418 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.59 | 50.0 | 3.49e-01 | 90.0% | 71.2% |
| None | — | 0.58 | 41.0 | 2.96e-01 | 72.7% | 87.9% | |
| 4371240 | 632.7.1.55 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › DUF2605 | 0.58 | 33.0 | 3.59e-01 | 78.2% | 65.3% |
| 4187702 | 1075.1.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain | 0.58 | 44.0 | 3.02e-01 | 87.3% | 24.9% |
| 3482907 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.58 | 42.0 | 4.18e-01 | 76.4% | 93.9% |
| 5018995 | 1079.1.1.5 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › DsbD_2 | 0.57 | 42.0 | 3.45e-01 | 80.0% | 75.5% |
| 3391865 | 3711.1.1.0 ↗ | alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein | 0.55 | 45.0 | 4.49e-01 | 88.2% | 87.8% |
| 3494037 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.53 | 43.0 | 3.34e-01 | 87.3% | 80.4% |
| 3535566 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.53 | 38.0 | 3.69e-01 | 85.5% | 66.4% |
| 3682290 | 5059.1.1.3 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TPT | 0.53 | 45.0 | 3.26e-01 | 95.5% | 76.3% |
| 3171524 | 4.1.1.289 ↗ | beta barrels › SH3 › SH3 › SH3 › RRG1_C | 0.52 | 40.0 | 4.07e-01 | 81.8% | 85.5% |
| 3366503 | 5074.1.1.10 ↗ | extended segments › Bacterial light-harvesting complex subunits › Bacterial light-harvesting complex subunits › Bacterial light-harvesting complex subunits › Mpv17_PMP22 | 0.51 | 38.0 | 3.31e-01 | 88.2% | 50.0% |
| 3231671 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 42.0 | 3.22e-01 | 87.3% | 80.4% |
| 4648894 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.50 | 44.0 | 4.35e-01 | 97.3% | 94.2% |
D2
medium
residues 45-181
Domain cluster:
rep: viral_intermediate_transcription_factor_VITF-3__YP_005296304__Cotia_virus_SPAn232__930275__D46-182
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04745.18 best | Pox_A8 | 158.2 | 3.50e-46 | 100.0% | 45.3% |