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intermediate_transcription_factor_VITF-3
Euk-VirNile_crocodilepox_virus
intermediate_transcription_factor_VITF-3__YP_784336__Nile_crocodilepox_virus__1285600
Identity
- Accession:
- YP_784336 ↗
- Protein ID:
- intermediate_transcription_factor_VITF-3
- Kingdom:
- euk
Quality
72.6
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Pokkesviricetes›
Chitovirales›
Poxviridae›
Crocodylidpoxvirus›
Nile_crocodilepox_virus
TaxID: 1285600
Cluster
View cluster (34 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 300-382
Domain cluster:
rep: putative_intermediate_transcription_factor_VITF-3__YP_009112839__Parapoxvirus_red_deer_HL953__1579460__D300-378
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05718.18 best | Pox_int_trans | 108.2 | 5.80e-31 | 100.0% | 21.7% |
D2
medium
residues 22-77_219-299
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05718.18 best | Pox_int_trans | 93.7 | 1.40e-26 | 59.9% | 21.2% |
| PF05718.18 | Pox_int_trans | 69.5 | 3.20e-19 | 42.3% | 14.9% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gscC00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.66 | 38.0 | 4.22e-01 | 70.8% | 70.9% |
| 2wb7A03 | 1.20.120.870 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › pT26-6p, five-helical bundle domain | 0.55 | 41.0 | 4.21e-01 | 78.1% | 80.1% |
| 8a1gC01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.53 | 37.0 | 3.35e-01 | 70.1% | 89.0% |
| 2okuA00 | 1.20.120.470 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Acyl-CoA dehydrogenase, C-terminal domain | 0.53 | 37.0 | 3.94e-01 | 76.6% | 80.3% |
| 4w8pA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.52 | 42.0 | 4.34e-01 | 91.2% | 87.7% |
| 6gyhA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.52 | 42.0 | 3.57e-01 | 86.1% | 80.0% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4949854 | 601.18.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 | 0.60 | 41.0 | 4.47e-01 | 92.7% | 84.1% |
| 3432194 | 611.8.1.9 ↗ | alpha bundles › N-cbl like › C-terminal domain of E3 ubiquitin-protein ligase ARIH1 › C-terminal domain of E3 ubiquitin-protein ligase ARIH1 › PGG | 0.57 | 41.0 | 3.96e-01 | 74.5% | 83.2% |
| 3659174 | 138.1.1.0 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain | 0.57 | 34.0 | 3.91e-01 | 96.4% | 81.0% |
| 3471420 | 3843.1.1.0 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K | 0.55 | 37.0 | 4.35e-01 | 71.5% | 94.0% |
| 5018330 | 4333.1.1.0 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain | 0.54 | 43.0 | 3.38e-01 | 89.1% | 97.8% |
D3
medium
residues 92-131_155-218