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js4906-25-2-S21_Prophage_curated_prodigal-single.1__X__X__00009

Bact-Vir

js4906-25-2-S21_Prophage_curated_prodigal-single.1__X__X__00009

Identity

Kingdom:
phage

Quality

61.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-88
PDB
D2 high residues 91-175
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nppA00 2.40.50.480 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Protein of unknown function DUF1093 0.75 54.0 5.37e-01 100.0% 73.6%
3j7yD01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.73 46.0 4.28e-01 77.6% 51.9%
3rd4B00 2.40.50.660 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.73 62.0 6.31e-01 100.0% 93.9%
2asbA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 53.0 5.59e-01 96.5% 94.7%
3trzA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 55.0 5.45e-01 100.0% 86.2%
4dqlB01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.67 52.0 4.78e-01 83.5% 96.3%
3qr8A01 2.40.50.230 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Gp5 N-terminal domain 0.66 52.0 5.26e-01 100.0% 84.5%
4owwB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 57.0 5.24e-01 100.0% 73.8%
6gmhH01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 59.0 4.90e-01 98.8% 98.6%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 58.0 5.72e-01 100.0% 93.3%
4egvA02 2.40.50.840 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 49.0 5.18e-01 98.8% 93.3%
1xjvA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 55.0 4.70e-01 100.0% 58.5%
6jy5B00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.64 52.0 5.36e-01 97.6% 91.5%
3hkzG00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 58.0 5.25e-01 100.0% 97.3%
1gd7A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 58.0 5.31e-01 100.0% 80.7%
3u4vA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 56.0 5.07e-01 100.0% 72.4%
3kf8A00 2.40.50.1040 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 55.0 4.21e-01 100.0% 64.7%
2khjA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 48.0 4.82e-01 98.8% 79.8%
2ok7A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.63 53.0 4.87e-01 92.9% 97.3%
2cqoA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 52.0 5.10e-01 100.0% 83.7%
3k7uC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 56.0 5.33e-01 100.0% 91.8%
3be3A00 2.30.30.320 Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain 0.61 41.0 4.34e-01 100.0% 77.6%
2qw7C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.61 54.0 5.19e-01 97.6% 85.3%
2gaiA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.61 48.0 4.25e-01 84.7% 87.8%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.61 41.0 3.69e-01 74.1% 50.4%
2ja9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 52.0 5.31e-01 98.8% 96.4%
3pqiA01 2.40.50.230 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Gp5 N-terminal domain 0.60 53.0 5.42e-01 100.0% 100.0%
1jb7A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 52.0 4.18e-01 100.0% 55.7%
2k75A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 53.0 4.99e-01 100.0% 89.3%
4fnfA00 2.40.50.50 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 51.0 4.92e-01 100.0% 83.7%
4qclA01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 50.0 5.05e-01 100.0% 93.0%
1jb7A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 50.0 4.11e-01 100.0% 74.0%
6mavB02 2.40.50.120 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 51.0 5.07e-01 100.0% 96.6%
2i4kA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.58 45.0 4.03e-01 87.1% 97.7%
2rjbA00 3.10.180.80 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › Uncharacterised protein PF07063, DUF1338 0.57 39.0 2.51e-01 70.6% 92.8%
3gd6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 43.0 3.66e-01 85.9% 90.8%
3g7gH00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.54 48.0 3.99e-01 100.0% 85.5%
3fw3B00 3.10.200.10 Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase 0.53 45.0 3.30e-01 96.5% 65.1%
4ckmB00 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.51 43.0 3.77e-01 100.0% 75.0%
2og9A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.50 38.0 3.41e-01 83.5% 81.5%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3970846 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.78 58.0 6.05e-01 98.8% 83.7%
3487242 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 50.0 5.70e-01 90.6% 93.7%
3750744 2.1.1.12 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e 0.74 51.0 5.70e-01 91.8% 93.8%
4854150 2.1.1.12 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e 0.74 50.0 5.60e-01 90.6% 92.2%
5037223 2.1.1.12 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e 0.74 50.0 5.75e-01 87.1% 98.3%
4959991 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.73 57.0 6.18e-01 100.0% 98.6%
4930846 2.1.1.12 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e 0.73 50.0 5.80e-01 89.4% 100.0%
4588452 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.73 47.0 5.11e-01 97.6% 80.0%
3289386 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 60.0 6.01e-01 98.8% 86.4%
3838219 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 61.0 6.11e-01 100.0% 89.4%
3386801 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 54.0 5.17e-01 100.0% 68.0%
4683300 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.71 42.0 3.64e-01 100.0% 40.0%
5012293 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 59.0 5.92e-01 98.8% 89.4%
3285634 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 57.0 5.59e-01 97.6% 82.2%
3784708 2.1.1.44 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.70 58.0 5.90e-01 100.0% 90.6%
4593266 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.69 49.0 5.19e-01 97.6% 84.0%
5035454 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 53.0 5.67e-01 98.8% 96.0%
4995707 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 59.0 5.56e-01 100.0% 81.0%
3934936 2.1.1.27 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RNA_pol_Rpb8 0.67 61.0 5.06e-01 100.0% 97.2%
3287532 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 58.0 5.52e-01 100.0% 81.0%
4943372 2.1.1.361 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EIF_2_alpha 0.67 54.0 5.60e-01 100.0% 92.5%
3456425 2.1.1.27 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RNA_pol_Rpb8 0.66 61.0 4.99e-01 100.0% 97.3%
3595472 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 58.0 4.89e-01 100.0% 58.6%
3474530 2.1.1.27 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RNA_pol_Rpb8 0.66 60.0 4.89e-01 100.0% 97.4%
5046188 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 53.0 5.63e-01 98.8% 98.7%
3242800 2.1.1.215 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_DEPS-1_1st 0.65 58.0 5.30e-01 98.8% 88.2%
3183856 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.65 43.0 2.75e-01 89.4% 14.9%
3285635 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 57.0 5.51e-01 98.8% 87.4%
5030089 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.64 53.0 5.51e-01 100.0% 95.0%
4938589 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 57.0 4.91e-01 100.0% 77.0%
3870119 2.1.1.119 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM10_OB 0.64 58.0 4.64e-01 100.0% 53.3%
3406278 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 54.0 4.67e-01 92.9% 82.3%
3632377 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 54.0 5.24e-01 98.8% 82.1%
5030410 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.63 56.0 5.45e-01 100.0% 87.4%
5027040 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.63 55.0 5.52e-01 100.0% 94.1%
3616990 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 55.0 5.09e-01 97.6% 79.1%
3512431 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 53.0 4.44e-01 92.9% 89.0%
4997715 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 57.0 4.49e-01 100.0% 95.3%
3178145 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 48.0 4.07e-01 84.7% 74.0%
5057705 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.62 54.0 5.28e-01 100.0% 87.8%
3492154 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 54.0 4.85e-01 97.6% 80.8%
3956143 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 54.0 5.34e-01 100.0% 92.2%
3656430 2.1.1.223 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 0.62 55.0 4.47e-01 100.0% 55.8%
3643472 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 55.0 4.70e-01 100.0% 65.7%
3888828 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 56.0 4.52e-01 100.0% 86.8%
3699328 2.1.1.46 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › BRCA-2_OB1 0.61 56.0 4.80e-01 100.0% 68.5%
3880568 2.1.1.23 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › POT1 0.61 53.0 4.54e-01 100.0% 66.9%
4504110 2484.1.1.197 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1, DNA_pol_B_exo2 0.61 54.0 3.47e-01 100.0% 38.8%
4942684 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 54.0 4.33e-01 100.0% 97.6%
3997678 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 53.0 4.91e-01 98.8% 79.1%
4976869 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 54.0 4.92e-01 100.0% 88.7%
3490309 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 55.0 4.67e-01 100.0% 79.3%
3907754 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 54.0 5.41e-01 98.8% 98.8%
3606597 2.1.1.25 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 0.60 53.0 4.50e-01 100.0% 62.8%
5055355 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 54.0 5.33e-01 100.0% 94.4%
3934534 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 51.0 4.42e-01 100.0% 75.7%
4964647 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 51.0 5.09e-01 100.0% 96.7%
3655845 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 52.0 5.07e-01 98.8% 93.7%
3275390 2.1.1.105 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NMD3_OB 0.59 52.0 4.68e-01 100.0% 75.0%
3274309 2003.1.2.18 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.58 41.0 2.48e-01 72.9% 35.8%
3718166 2.1.1.105 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NMD3_OB 0.58 51.0 4.68e-01 100.0% 80.0%
3446498 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.57 50.0 4.29e-01 100.0% 78.6%
3470145 2.1.1.23 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › POT1 0.55 41.0 4.41e-01 96.5% 100.0%
3541772 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 37.0 3.26e-01 75.3% 46.9%
3791156 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.53 44.0 3.47e-01 92.9% 73.3%
4448712 1.1.7.50 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 0.51 46.0 4.01e-01 97.6% 73.6%
5041316 5.1.4.664 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BNR_2 0.51 39.0 2.62e-01 85.9% 52.5%