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js4906-25-2-S21_Prophage_curated_prodigal-single.1__X__X__00037

Bact-Vir

js4906-25-2-S21_Prophage_curated_prodigal-single.1__X__X__00037

Identity

Kingdom:
phage

Quality

92.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-214
PDB
Domain cluster: rep: KT852578.1__ALJ98046.1__BMBtp1_54__00054__D4-184
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yarH00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.86 75.0 7.70e-01 98.6% 94.1%
1iruI00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.85 73.0 7.24e-01 98.1% 85.5%
6muwJ00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.84 74.0 7.57e-01 97.6% 94.1%
6e5bN00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.84 72.0 7.42e-01 97.6% 94.0%
1rypK00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.83 73.0 7.58e-01 98.1% 97.5%
6muwK00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.83 72.0 7.51e-01 97.6% 97.9%
6qm7N00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.81 72.0 7.14e-01 98.1% 89.4%
1ryp200 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.81 75.0 7.20e-01 98.1% 87.1%
6qm7K00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.80 73.0 7.47e-01 98.1% 98.1%
6muwN00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.79 74.0 7.27e-01 97.6% 95.1%
1ryp100 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.78 73.0 7.19e-01 97.6% 93.2%
5fmgA00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.77 65.0 6.43e-01 98.6% 84.0%
1rypA00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.72 65.0 6.20e-01 98.6% 82.7%
1x31D00 3.30.2270.10 Alpha Beta › 2-Layer Sandwich › Folate-binding fold › Folate-binding superfamily 0.53 21.0 3.01e-01 97.2% 78.0%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.50 24.0 3.38e-01 77.4% 100.0%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5052929 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.86 74.0 7.63e-01 95.8% 93.0%
5078250 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.86 75.0 7.64e-01 97.6% 92.7%
3252053 210.1.1.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome,Pr_beta_C 0.86 74.0 6.85e-01 98.1% 73.7%
3479088 210.1.1.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits 0.85 73.0 7.23e-01 98.1% 84.3%
3908924 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.85 73.0 6.81e-01 98.1% 73.7%
3934966 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.85 73.0 7.05e-01 97.6% 80.7%
3191231 210.1.1.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome,Pr_beta_C 0.85 73.0 7.13e-01 98.1% 82.5%
3708226 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.84 73.0 6.93e-01 97.6% 78.3%
3599053 210.1.1.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits 0.84 73.0 7.27e-01 97.6% 87.4%
2980434 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.84 72.0 7.57e-01 97.6% 97.9%
2521302 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.83 72.0 7.50e-01 97.6% 97.9%
4302934 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.83 71.0 7.43e-01 97.6% 96.9%
3644082 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.82 74.0 6.98e-01 98.1% 80.7%
3662110 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.82 74.0 7.46e-01 98.1% 93.8%
4858762 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.81 71.0 7.19e-01 98.1% 91.8%
4108185 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.81 64.0 7.05e-01 92.0% 98.3%
5051147 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.80 74.0 7.07e-01 95.8% 96.7%
4973595 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.79 75.0 7.07e-01 98.6% 87.8%
4973409 210.1.1.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits 0.78 74.0 7.11e-01 100.0% 97.1%
4950432 210.1.1.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › DUF2121 0.71 57.0 6.09e-01 92.9% 92.6%
3679101 210.1.1.2 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome,Proteasome_A_N 0.70 61.0 5.74e-01 98.6% 75.9%