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js4906-25-2-S21_Prophage_curated_prodigal-single.1__X__X__00050

Bact-Vir

js4906-25-2-S21_Prophage_curated_prodigal-single.1__X__X__00050

Identity

Kingdom:
phage

Quality

88.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-147
PDB
Domain cluster: rep: MK416008.1__QBP08155.1__X__00043__D161-291
D2 high residues 159-285
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2a6cA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.71 35.0 4.47e-01 70.9% 80.3%
1aepA00 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.54 38.0 3.61e-01 73.2% 98.7%
2gsvA00 6.10.140.40 Special › Helix non-globular › Helix Hairpins › 0.52 23.0 3.14e-01 85.8% 79.1%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5004943 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.58 48.0 4.47e-01 89.0% 94.4%
3937791 633.10.1.18 ↗ alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › THU_Piezo1 0.55 29.0 3.21e-01 77.2% 62.0%
3286065 632.15.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) 0.50 28.0 3.56e-01 73.2% 97.1%
4932665 181.1.1.0 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.50 26.0 2.98e-01 85.8% 67.8%