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js4906-25-2-S21_Prophage_curated_prodigal-single.1__X__X__00071
Bact-Virjs4906-25-2-S21_Prophage_curated_prodigal-single.1__X__X__00071
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-114
Domain cluster:
rep: IMGVR_UViG_3300028564_000083-3300028564-Ga0255344_100350621__D115-222
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00712.25 best | DNA_pol3_beta | 70.2 | 2.50e-19 | 100.0% | 95.0% |
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4tr6A01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.97 | 95.0 | 7.81e-01 | 100.0% | 67.2% |
| 5agvA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.97 | 93.0 | 8.97e-01 | 100.0% | 90.3% |
| 3t0pA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.96 | 93.0 | 7.83e-01 | 100.0% | 65.7% |
| 4trtA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.96 | 92.0 | 8.93e-01 | 100.0% | 91.8% |
| 6ptrB01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.96 | 93.0 | 9.36e-01 | 100.0% | 100.0% |
| 2avtB01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.96 | 92.0 | 7.77e-01 | 100.0% | 66.9% |
| 3pweA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.95 | 92.0 | 8.89e-01 | 100.0% | 92.7% |
| 1vpkA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.94 | 90.0 | 8.84e-01 | 100.0% | 94.2% |
| 5agvA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.91 | 87.0 | 8.21e-01 | 100.0% | 93.9% |
| 5w7zA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.91 | 88.0 | 8.81e-01 | 100.0% | 100.0% |
| 1vpkA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.90 | 86.0 | 8.19e-01 | 100.0% | 89.8% |
| 6ap4B02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.89 | 84.0 | 7.74e-01 | 100.0% | 90.1% |
| 4trtA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.88 | 82.0 | 8.08e-01 | 100.0% | 93.3% |
| 4trtA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.88 | 82.0 | 8.01e-01 | 97.3% | 95.0% |
| 3t0pA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.87 | 81.0 | 6.58e-01 | 100.0% | 57.0% |
| 1vpkA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.87 | 83.0 | 8.15e-01 | 100.0% | 95.0% |
| 5wceA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.86 | 81.0 | 7.72e-01 | 100.0% | 94.6% |
| 2avtA02 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.85 | 81.0 | 6.52e-01 | 100.0% | 57.8% |
| 5wceA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.84 | 80.0 | 7.90e-01 | 100.0% | 95.0% |
| 5aguA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.84 | 80.0 | 7.66e-01 | 100.0% | 94.4% |
| 1jqlA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.83 | 78.0 | 7.66e-01 | 100.0% | 94.1% |
| 4rkiA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.83 | 77.0 | 7.30e-01 | 98.2% | 92.3% |
| 3p91A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.82 | 76.0 | 5.74e-01 | 97.3% | 45.7% |
| 1plqA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.82 | 77.0 | 5.70e-01 | 98.2% | 46.5% |
| 3ifvC00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.82 | 77.0 | 5.83e-01 | 100.0% | 46.7% |
| 1u7bA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.82 | 76.0 | 5.65e-01 | 97.3% | 46.2% |
| 1lqlA01 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.82 | 21.0 | 4.21e-01 | 89.4% | 100.0% |
| 1rwzA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.81 | 77.0 | 5.81e-01 | 100.0% | 46.7% |
| 1sxjH02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.81 | 75.0 | 7.19e-01 | 97.3% | 93.0% |
| 1ge8A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.79 | 72.0 | 5.51e-01 | 97.3% | 48.3% |
| 8dqwG01 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.79 | 71.0 | 6.00e-01 | 95.6% | 74.3% |
| 1sxjH01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.78 | 73.0 | 7.09e-01 | 100.0% | 97.6% |
| 2ix2B00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.78 | 73.0 | 5.56e-01 | 100.0% | 47.8% |
| 6j8yC00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.77 | 69.0 | 5.23e-01 | 96.5% | 47.1% |
| 3a1jB00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.77 | 71.0 | 5.30e-01 | 100.0% | 50.9% |
| 1b77A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.72 | 65.0 | 5.09e-01 | 99.1% | 48.7% |
| 3kihC01 | 2.20.25.510 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.67 | 21.0 | 3.75e-01 | 90.3% | 94.1% |
| 1fx7B03 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.58 | 33.0 | 3.79e-01 | 98.2% | 77.5% |
| 2r41A00 | 3.10.450.150 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein | 0.57 | 41.0 | 4.31e-01 | 95.6% | 83.5% |
| 1ex4B02 | 2.30.30.10 | Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral | 0.55 | 25.0 | 3.31e-01 | 96.5% | 79.7% |
| 6mv2A01 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 36.0 | 3.81e-01 | 85.0% | 78.4% |
| 2it9A00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.51 | 36.0 | 3.58e-01 | 71.7% | 73.3% |
| 1k8kC00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 37.0 | 2.65e-01 | 76.1% | 48.3% |
| 1azpA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 29.0 | 3.74e-01 | 92.0% | 98.5% |
ECOD (93)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4480621 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.98 | 95.0 | 9.30e-01 | 100.0% | 93.3% |
| 4407599 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.98 | 95.0 | 9.15e-01 | 100.0% | 96.8% |
| 2476832 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.97 | 95.0 | 8.77e-01 | 100.0% | 89.6% |
| 3015241 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.97 | 94.0 | 9.26e-01 | 100.0% | 95.0% |
| 4251800 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.97 | 94.0 | 8.85e-01 | 100.0% | 86.9% |
| 4047098 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.97 | 94.0 | 9.17e-01 | 100.0% | 96.7% |
| 2987540 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.96 | 93.0 | 8.75e-01 | 100.0% | 86.2% |
| 1549269 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.96 | 92.0 | 8.97e-01 | 100.0% | 92.6% |
| 2522057 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.96 | 93.0 | 9.00e-01 | 100.0% | 91.9% |
| 158230 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.96 | 93.0 | 8.85e-01 | 100.0% | 94.5% |
| 2392242 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.96 | 86.0 | 8.68e-01 | 100.0% | 92.9% |
| 3387600 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.95 | 93.0 | 9.05e-01 | 100.0% | 94.2% |
| 4315973 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.95 | 91.0 | 8.76e-01 | 100.0% | 94.4% |
| 1871494 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.94 | 91.0 | 8.90e-01 | 100.0% | 93.4% |
| 4650306 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.94 | 92.0 | 8.95e-01 | 100.0% | 95.0% |
| 4860663 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.94 | 91.0 | 8.32e-01 | 100.0% | 81.4% |
| 4102438 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.94 | 91.0 | 8.92e-01 | 100.0% | 95.0% |
| 4234515 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.94 | 91.0 | 8.87e-01 | 100.0% | 95.8% |
| 4876748 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.94 | 91.0 | 8.74e-01 | 100.0% | 91.1% |
| 5977 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.94 | 90.0 | 8.84e-01 | 100.0% | 94.2% |
| 2878151 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.94 | 90.0 | 8.77e-01 | 100.0% | 93.4% |
| 2492033 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.93 | 89.0 | 8.14e-01 | 100.0% | 90.0% |
| 4460660 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.92 | 88.0 | 8.18e-01 | 100.0% | 91.1% |
| 4194202 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.90 | 86.0 | 8.29e-01 | 100.0% | 92.0% |
| 5978 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.90 | 86.0 | 8.33e-01 | 100.0% | 93.5% |
| 3015240 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.90 | 86.0 | 8.35e-01 | 100.0% | 93.4% |
| 2878142 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.89 | 85.0 | 8.26e-01 | 100.0% | 92.7% |
| 144176 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.89 | 85.0 | 8.20e-01 | 100.0% | 93.5% |
| 3963789 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.89 | 85.0 | 8.31e-01 | 100.0% | 95.8% |
| 1013950 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.89 | 80.0 | 7.82e-01 | 94.7% | 89.3% |
| 3281112 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.89 | 84.0 | 8.21e-01 | 99.1% | 95.0% |
| 4050655 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.89 | 84.0 | 7.96e-01 | 100.0% | 88.5% |
| 3015239 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.88 | 82.0 | 8.05e-01 | 100.0% | 91.6% |
| 3839477 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.88 | 84.0 | 8.08e-01 | 100.0% | 93.6% |
| 1549270 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.88 | 82.0 | 8.14e-01 | 100.0% | 94.9% |
| 4606763 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.88 | 82.0 | 8.07e-01 | 97.3% | 92.5% |
| 4650779 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.88 | 85.0 | 8.14e-01 | 100.0% | 92.0% |
| 4591776 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.88 | 83.0 | 7.91e-01 | 100.0% | 90.0% |
| 2141304 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.88 | 83.0 | 7.84e-01 | 100.0% | 95.4% |
| 4083029 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.88 | 83.0 | 8.00e-01 | 100.0% | 92.8% |
| 4146527 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.88 | 83.0 | 7.87e-01 | 100.0% | 91.5% |
| 1549271 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.88 | 82.0 | 7.92e-01 | 97.3% | 92.7% |
| 3291440 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.87 | 75.0 | 7.66e-01 | 100.0% | 91.8% |
| 4069893 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.87 | 82.0 | 7.95e-01 | 100.0% | 92.0% |
| 4569733 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.87 | 82.0 | 7.54e-01 | 100.0% | 92.1% |
| 2878147 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.86 | 82.0 | 7.60e-01 | 100.0% | 87.6% |
| 3387590 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.86 | 78.0 | 7.74e-01 | 100.0% | 93.0% |
| 4463778 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.86 | 81.0 | 7.93e-01 | 100.0% | 95.0% |
| 426904 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.86 | 81.0 | 7.90e-01 | 100.0% | 91.9% |
| 2492036 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.86 | 82.0 | 7.77e-01 | 100.0% | 89.1% |
| 4460376 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.85 | 80.0 | 7.89e-01 | 100.0% | 94.2% |
| 5043507 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.85 | 78.0 | 7.69e-01 | 95.6% | 95.8% |
| 2096126 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.84 | 80.0 | 7.81e-01 | 100.0% | 92.6% |
| 3388280 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.83 | 76.0 | 7.49e-01 | 100.0% | 92.5% |
| 4030418 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.83 | 76.0 | 6.99e-01 | 96.5% | 91.4% |
| 4372908 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.82 | 77.0 | 7.37e-01 | 97.3% | 88.8% |
| 143428 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.82 | 76.0 | 7.47e-01 | 97.3% | 93.3% |
| 4934002 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.82 | 79.0 | 7.44e-01 | 100.0% | 90.8% |
| 4948360 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.82 | 75.0 | 7.17e-01 | 96.5% | 87.6% |
| 4983064 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.82 | 78.0 | 7.54e-01 | 100.0% | 94.4% |
| 2588759 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.82 | 76.0 | 7.41e-01 | 97.3% | 95.0% |
| 4660283 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.82 | 78.0 | 7.49e-01 | 100.0% | 94.4% |
| 1290662 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.82 | 78.0 | 7.07e-01 | 100.0% | 83.9% |
| 4976500 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.81 | 77.0 | 7.38e-01 | 100.0% | 92.2% |
| 5991 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.81 | 76.0 | 7.43e-01 | 99.1% | 94.3% |
| 138072 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.81 | 77.0 | 7.29e-01 | 100.0% | 91.6% |
| 4026069 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.81 | 74.0 | 6.93e-01 | 96.5% | 88.9% |
| 5029787 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.81 | 77.0 | 7.57e-01 | 100.0% | 94.2% |
| 5028024 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.81 | 77.0 | 7.30e-01 | 100.0% | 90.8% |
| 3791518 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.81 | 74.0 | 7.26e-01 | 94.7% | 90.8% |
| 4941929 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.81 | 76.0 | 7.30e-01 | 100.0% | 93.0% |
| 5033948 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.81 | 77.0 | 7.26e-01 | 100.0% | 90.0% |
| 4929645 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.81 | 76.0 | 7.36e-01 | 100.0% | 94.4% |
| 4599875 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.81 | 76.0 | 7.44e-01 | 100.0% | 94.2% |
| 4943405 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.80 | 74.0 | 7.16e-01 | 97.3% | 93.6% |
| 5011281 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.80 | 76.0 | 7.32e-01 | 100.0% | 92.8% |
| 4212381 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.80 | 76.0 | 7.10e-01 | 100.0% | 88.9% |
| 4998585 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.80 | 76.0 | 7.44e-01 | 100.0% | 95.0% |
| 4991675 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.80 | 76.0 | 7.28e-01 | 100.0% | 93.6% |
| 5044014 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.80 | 73.0 | 7.31e-01 | 97.3% | 99.1% |
| 5037345 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.80 | 75.0 | 7.08e-01 | 100.0% | 92.5% |
| 4302174 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.80 | 75.0 | 7.23e-01 | 100.0% | 92.8% |
| 4517015 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.79 | 75.0 | 7.24e-01 | 100.0% | 93.5% |
| 5043506 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.79 | 75.0 | 7.19e-01 | 100.0% | 92.8% |
| 3725759 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.79 | 74.0 | 6.35e-01 | 100.0% | 94.1% |
| 5010672 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.79 | 74.0 | 7.28e-01 | 100.0% | 96.7% |
| 3932751 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.79 | 71.0 | 6.76e-01 | 95.6% | 90.8% |
| 4456195 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.79 | 74.0 | 7.29e-01 | 100.0% | 95.8% |
| 167574 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.79 | 74.0 | 6.99e-01 | 100.0% | 87.8% |
| 309454 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.78 | 74.0 | 6.96e-01 | 100.0% | 87.9% |
| 5980 | 227.1.1.9 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_PPF | 0.78 | 64.0 | 6.51e-01 | 99.1% | 90.0% |
| 4031110 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 36.0 | 3.56e-01 | 77.9% | 60.0% |
| 5056600 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.54 | 35.0 | 3.49e-01 | 85.8% | 62.5% |
D2
high
residues 124-234
Domain cluster:
rep: IMGVR_UViG_3300028564_000083-3300028564-Ga0255344_100350621__D115-222
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02767.22 best | DNA_pol3_beta_2 | 45.6 | 1.10e-11 | 97.3% | 91.4% |
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6ap4B02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.93 | 89.0 | 8.08e-01 | 100.0% | 86.5% |
| 1vpkA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.92 | 87.0 | 8.23e-01 | 100.0% | 85.9% |
| 4trtA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.90 | 82.0 | 8.00e-01 | 100.0% | 89.1% |
| 5wceA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.89 | 85.0 | 8.02e-01 | 100.0% | 89.9% |
| 5agvA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.88 | 84.0 | 7.90e-01 | 100.0% | 90.8% |
| 6ptrB01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.88 | 80.0 | 8.02e-01 | 99.1% | 94.7% |
| 5agvA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.88 | 81.0 | 7.75e-01 | 100.0% | 87.1% |
| 1vpkA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.87 | 81.0 | 7.92e-01 | 100.0% | 90.8% |
| 3t0pA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.87 | 80.0 | 6.74e-01 | 100.0% | 62.8% |
| 3pweA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.86 | 80.0 | 7.70e-01 | 100.0% | 88.6% |
| 4trtA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.86 | 78.0 | 7.58e-01 | 100.0% | 87.7% |
| 4tr6A01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.85 | 81.0 | 6.70e-01 | 100.0% | 64.4% |
| 2avtB01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.83 | 77.0 | 6.57e-01 | 100.0% | 64.0% |
| 1rwzA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.80 | 74.0 | 5.60e-01 | 100.0% | 44.7% |
| 4trtA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.80 | 75.0 | 7.27e-01 | 100.0% | 92.5% |
| 5w7zA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.79 | 71.0 | 7.12e-01 | 99.1% | 94.7% |
| 3t0pA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.78 | 70.0 | 5.76e-01 | 100.0% | 55.4% |
| 1plqA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.78 | 73.0 | 5.42e-01 | 100.0% | 46.1% |
| 1u7bA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.77 | 71.0 | 5.36e-01 | 100.0% | 46.2% |
| 4rkiA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.76 | 72.0 | 6.77e-01 | 100.0% | 89.2% |
| 1sxjH02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.76 | 71.0 | 6.78e-01 | 100.0% | 93.0% |
| 8dqwG01 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.76 | 71.0 | 5.99e-01 | 100.0% | 74.9% |
| 3p91A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.76 | 70.0 | 5.34e-01 | 100.0% | 45.3% |
| 2ix2B00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.75 | 70.0 | 5.30e-01 | 100.0% | 46.5% |
| 2avtA02 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.75 | 69.0 | 5.62e-01 | 100.0% | 57.3% |
| 5aguA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.73 | 68.0 | 6.55e-01 | 100.0% | 91.3% |
| 1ge8A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.73 | 67.0 | 5.17e-01 | 100.0% | 47.5% |
| 3a1jB00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.72 | 66.0 | 4.88e-01 | 100.0% | 42.4% |
| 4o5vA03 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.62 | 32.0 | 3.78e-01 | 100.0% | 71.1% |
| 1q7hA01 | 3.10.450.120 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 | 0.61 | 30.0 | 3.76e-01 | 100.0% | 78.5% |
| 1w2tA02 | 2.60.120.560 | Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 | 0.54 | 38.0 | 3.57e-01 | 100.0% | 59.7% |
| 4l5rC02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 34.0 | 3.70e-01 | 93.7% | 83.1% |
| 3cm1A00 | 2.30.31.20 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB | 0.51 | 34.0 | 3.24e-01 | 79.3% | 55.1% |
| 1k32A01 | 2.120.10.60 | Mainly Beta › 6 Propeller › Neuraminidase › Tricorn protease N-terminal domain | 0.51 | 38.0 | 2.91e-01 | 79.3% | 82.7% |
| 3aabB00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 36.0 | 3.74e-01 | 80.2% | 80.2% |
ECOD (90)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 144176 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.95 | 92.0 | 8.77e-01 | 100.0% | 89.5% |
| 3015240 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.94 | 89.0 | 8.61e-01 | 100.0% | 89.3% |
| 2878142 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.94 | 90.0 | 8.61e-01 | 100.0% | 89.4% |
| 1013950 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.94 | 89.0 | 8.61e-01 | 100.0% | 90.2% |
| 4591776 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.94 | 90.0 | 8.47e-01 | 100.0% | 86.2% |
| 3963789 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.94 | 89.0 | 8.68e-01 | 100.0% | 91.7% |
| 4050655 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.93 | 89.0 | 8.33e-01 | 100.0% | 84.6% |
| 4069893 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.93 | 89.0 | 8.47e-01 | 100.0% | 88.0% |
| 4146527 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.93 | 89.0 | 8.37e-01 | 100.0% | 87.7% |
| 2141304 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.93 | 89.0 | 8.32e-01 | 100.0% | 91.6% |
| 4083029 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.93 | 88.0 | 8.42e-01 | 100.0% | 88.0% |
| 3388280 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.93 | 85.0 | 8.24e-01 | 100.0% | 88.3% |
| 4194202 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.93 | 88.0 | 8.43e-01 | 100.0% | 88.0% |
| 4463778 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.93 | 87.0 | 8.49e-01 | 100.0% | 90.8% |
| 5978 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.92 | 87.0 | 8.37e-01 | 100.0% | 89.4% |
| 159555 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.91 | 87.0 | 8.22e-01 | 100.0% | 87.4% |
| 4569733 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.90 | 86.0 | 7.84e-01 | 100.0% | 88.6% |
| 1549270 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.90 | 82.0 | 8.05e-01 | 100.0% | 90.6% |
| 4460376 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.90 | 83.0 | 8.11e-01 | 100.0% | 90.0% |
| 3839477 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.90 | 86.0 | 8.20e-01 | 100.0% | 89.6% |
| 4102438 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.88 | 82.0 | 7.99e-01 | 100.0% | 90.8% |
| 5977 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.88 | 81.0 | 7.92e-01 | 100.0% | 90.0% |
| 4876748 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.88 | 82.0 | 7.85e-01 | 100.0% | 87.9% |
| 4460660 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.88 | 84.0 | 7.78e-01 | 100.0% | 88.1% |
| 2987540 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.88 | 80.0 | 7.56e-01 | 100.0% | 82.3% |
| 2522057 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.88 | 81.0 | 7.78e-01 | 100.0% | 87.8% |
| 1549269 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.86 | 78.0 | 7.60e-01 | 100.0% | 88.4% |
| 3387600 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.86 | 79.0 | 7.71e-01 | 100.0% | 90.0% |
| 3015241 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.86 | 79.0 | 7.69e-01 | 100.0% | 90.8% |
| 2878151 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.86 | 79.0 | 7.65e-01 | 100.0% | 89.3% |
| 3281112 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.86 | 79.0 | 7.67e-01 | 98.2% | 90.0% |
| 4480621 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.86 | 77.0 | 7.55e-01 | 100.0% | 89.2% |
| 4407599 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.85 | 81.0 | 7.72e-01 | 100.0% | 92.8% |
| 2476832 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.85 | 81.0 | 7.48e-01 | 100.0% | 87.4% |
| 4251800 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.85 | 80.0 | 7.50e-01 | 100.0% | 84.6% |
| 4860663 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.85 | 79.0 | 7.23e-01 | 100.0% | 78.6% |
| 4059466 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.85 | 58.0 | 6.86e-01 | 70.3% | 100.0% |
| 1871494 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.84 | 77.0 | 7.50e-01 | 100.0% | 89.3% |
| 4047098 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.84 | 79.0 | 7.69e-01 | 100.0% | 92.5% |
| 158230 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.84 | 79.0 | 7.48e-01 | 100.0% | 91.3% |
| 2392242 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.83 | 71.0 | 7.13e-01 | 100.0% | 89.4% |
| 4234515 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.83 | 77.0 | 7.47e-01 | 100.0% | 91.7% |
| 4650306 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.83 | 76.0 | 7.43e-01 | 100.0% | 90.8% |
| 4315973 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.82 | 77.0 | 7.40e-01 | 100.0% | 90.4% |
| 4995027 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.82 | 76.0 | 7.25e-01 | 100.0% | 87.2% |
| 2492033 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.81 | 76.0 | 6.95e-01 | 100.0% | 84.3% |
| 3015239 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.80 | 72.0 | 7.02e-01 | 100.0% | 89.1% |
| 1549271 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.80 | 75.0 | 7.20e-01 | 100.0% | 90.2% |
| 4372908 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.78 | 71.0 | 6.86e-01 | 100.0% | 86.4% |
| 4059128 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.78 | 72.0 | 7.02e-01 | 100.0% | 90.8% |
| 2588759 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.78 | 73.0 | 7.13e-01 | 100.0% | 95.0% |
| 426904 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.78 | 70.0 | 6.80e-01 | 100.0% | 87.8% |
| 4998585 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.78 | 73.0 | 7.11e-01 | 100.0% | 93.3% |
| 4212381 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.78 | 73.0 | 6.77e-01 | 100.0% | 87.4% |
| 4976500 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.78 | 73.0 | 6.93e-01 | 100.0% | 89.8% |
| 4936049 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.78 | 71.0 | 6.94e-01 | 100.0% | 90.8% |
| 138072 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.78 | 73.0 | 6.85e-01 | 100.0% | 90.8% |
| 1290662 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.77 | 73.0 | 6.60e-01 | 100.0% | 83.2% |
| 5029787 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.77 | 72.0 | 7.06e-01 | 100.0% | 93.3% |
| 5028024 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.77 | 72.0 | 6.82e-01 | 100.0% | 88.5% |
| 3251045 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.77 | 72.0 | 6.39e-01 | 100.0% | 76.6% |
| 5059299 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.77 | 70.0 | 6.86e-01 | 100.0% | 90.8% |
| 4517015 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.77 | 72.0 | 6.90e-01 | 100.0% | 92.7% |
| 2878147 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.77 | 71.0 | 6.61e-01 | 100.0% | 83.2% |
| 4983064 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.77 | 72.0 | 6.89e-01 | 100.0% | 93.5% |
| 4929645 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.77 | 72.0 | 6.86e-01 | 100.0% | 92.8% |
| 4660283 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.76 | 71.0 | 6.84e-01 | 100.0% | 92.0% |
| 4980359 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.76 | 70.0 | 6.80e-01 | 100.0% | 90.8% |
| 4943405 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.76 | 71.0 | 6.83e-01 | 100.0% | 93.6% |
| 3932751 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.76 | 71.0 | 6.74e-01 | 100.0% | 90.8% |
| 4934002 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.76 | 71.0 | 6.71e-01 | 100.0% | 86.9% |
| 143428 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.76 | 71.0 | 6.91e-01 | 100.0% | 92.5% |
| 167574 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.76 | 71.0 | 6.67e-01 | 100.0% | 87.0% |
| 4941929 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.76 | 71.0 | 6.72e-01 | 100.0% | 89.1% |
| 5011281 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.76 | 71.0 | 6.78e-01 | 100.0% | 91.2% |
| 309454 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.76 | 70.0 | 6.62e-01 | 100.0% | 86.4% |
| 5043507 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.76 | 71.0 | 6.88e-01 | 100.0% | 95.8% |
| 5037345 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.76 | 70.0 | 6.59e-01 | 100.0% | 89.5% |
| 4991675 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.76 | 70.0 | 6.73e-01 | 100.0% | 92.8% |
| 4456195 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.75 | 70.0 | 6.84e-01 | 100.0% | 95.0% |
| 4948360 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.75 | 70.0 | 6.63e-01 | 100.0% | 86.8% |
| 4956740 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.75 | 70.0 | 6.68e-01 | 100.0% | 93.6% |
| 4026069 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.74 | 69.0 | 6.44e-01 | 100.0% | 89.6% |
| 5037314 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.74 | 69.0 | 6.73e-01 | 100.0% | 95.0% |
| 5010672 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.74 | 68.0 | 6.69e-01 | 100.0% | 95.8% |
| 4943404 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.73 | 68.0 | 6.41e-01 | 100.0% | 90.0% |
| 3351110 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.73 | 67.0 | 6.52e-01 | 100.0% | 97.5% |
| 3520221 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.72 | 39.0 | 4.02e-01 | 70.3% | 55.2% |
| 3791518 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.71 | 66.0 | 6.40e-01 | 100.0% | 92.5% |
| 3507499 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.70 | 64.0 | 5.96e-01 | 100.0% | 95.6% |
D3
high
residues 245-371
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02768.21 best | DNA_pol3_beta_3 | 47.6 | 2.00e-12 | 97.6% | 95.9% |
CATH (41)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3t0pA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.95 | 85.0 | 7.19e-01 | 100.0% | 60.6% |
| 1vpkA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.93 | 82.0 | 8.55e-01 | 97.6% | 97.5% |
| 4trtA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.92 | 84.0 | 8.64e-01 | 98.4% | 99.2% |
| 2avtA02 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.92 | 85.0 | 7.12e-01 | 100.0% | 61.3% |
| 5wceA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.91 | 81.0 | 8.37e-01 | 98.4% | 98.3% |
| 1jqlA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.89 | 79.0 | 8.17e-01 | 98.4% | 98.3% |
| 4trtA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.88 | 74.0 | 7.60e-01 | 94.5% | 90.2% |
| 3p91A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.86 | 76.0 | 5.98e-01 | 100.0% | 48.6% |
| 5w7zA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.85 | 71.0 | 7.49e-01 | 92.9% | 96.5% |
| 5agvA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.85 | 71.0 | 7.25e-01 | 95.3% | 89.5% |
| 1vpkA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.85 | 71.0 | 7.33e-01 | 94.5% | 92.5% |
| 5aguA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.85 | 79.0 | 8.00e-01 | 98.4% | 97.6% |
| 3pweA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.84 | 70.0 | 7.19e-01 | 93.7% | 90.2% |
| 6ptrB01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.84 | 69.0 | 7.33e-01 | 92.9% | 96.5% |
| 1vpkA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.83 | 73.0 | 7.32e-01 | 98.4% | 91.4% |
| 4rkiA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.83 | 78.0 | 7.80e-01 | 100.0% | 96.9% |
| 3a1jB00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.82 | 75.0 | 5.72e-01 | 100.0% | 45.4% |
| 1u7bA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.82 | 76.0 | 5.91e-01 | 100.0% | 49.4% |
| 3ifvC00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.82 | 75.0 | 5.92e-01 | 100.0% | 51.2% |
| 1sxjH01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.82 | 72.0 | 7.29e-01 | 92.9% | 94.4% |
| 1ud9A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.81 | 73.0 | 5.73e-01 | 100.0% | 49.6% |
| 1plqA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.81 | 77.0 | 5.91e-01 | 100.0% | 49.2% |
| 5agvA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.80 | 73.0 | 7.21e-01 | 95.3% | 92.4% |
| 1rwzA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.80 | 72.0 | 5.69e-01 | 100.0% | 49.6% |
| 2ix2B00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.80 | 72.0 | 5.70e-01 | 100.0% | 49.8% |
| 1sxjH02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.80 | 76.0 | 7.58e-01 | 100.0% | 99.2% |
| 6j8yC00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.79 | 71.0 | 5.52e-01 | 95.3% | 47.1% |
| 4trtA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.79 | 65.0 | 6.69e-01 | 96.1% | 91.6% |
| 1ge8A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.79 | 74.0 | 5.88e-01 | 99.2% | 80.3% |
| 6ap4B02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.78 | 72.0 | 6.94e-01 | 98.4% | 92.2% |
| 2z0lA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.77 | 73.0 | 5.38e-01 | 100.0% | 48.3% |
| 6j8yA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.77 | 71.0 | 5.56e-01 | 100.0% | 49.8% |
| 3hslX00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.76 | 71.0 | 5.35e-01 | 100.0% | 51.9% |
| 8dqwG01 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.76 | 70.0 | 6.23e-01 | 99.2% | 100.0% |
| 2ix2A01 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.75 | 68.0 | 5.51e-01 | 96.1% | 79.6% |
| 1t6lA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.74 | 68.0 | 5.35e-01 | 100.0% | 50.2% |
| 1dmlA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.73 | 67.0 | 5.15e-01 | 100.0% | 46.8% |
| 4rzkA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 36.0 | 4.25e-01 | 78.7% | 88.5% |
| 2r41A00 | 3.10.450.150 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein | 0.57 | 40.0 | 4.35e-01 | 99.2% | 89.3% |
| 4a18P00 | 3.30.720.90 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.57 | 28.0 | 3.74e-01 | 85.0% | 89.4% |
| 1z2nX02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.55 | 35.0 | 3.70e-01 | 87.4% | 72.5% |
ECOD (94)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3015239 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.96 | 85.0 | 8.82e-01 | 100.0% | 97.5% |
| 426904 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.95 | 86.0 | 8.81e-01 | 100.0% | 95.9% |
| 5979 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.93 | 85.0 | 8.64e-01 | 100.0% | 96.7% |
| 4876750 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.93 | 84.0 | 8.51e-01 | 100.0% | 95.2% |
| 1549271 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.93 | 85.0 | 8.70e-01 | 100.0% | 98.4% |
| 4500973 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.92 | 85.0 | 8.68e-01 | 100.0% | 98.4% |
| 4650779 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.92 | 85.0 | 8.61e-01 | 100.0% | 96.8% |
| 1102993 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.92 | 83.0 | 7.98e-01 | 100.0% | 83.8% |
| 4379629 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.92 | 81.0 | 8.37e-01 | 99.2% | 96.7% |
| 4162061 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.92 | 84.0 | 8.57e-01 | 98.4% | 97.6% |
| 2096126 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.91 | 82.0 | 8.43e-01 | 100.0% | 97.5% |
| 2878147 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.91 | 86.0 | 8.33e-01 | 100.0% | 90.5% |
| 4360456 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.91 | 86.0 | 8.51e-01 | 100.0% | 95.4% |
| 4437554 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.91 | 83.0 | 8.44e-01 | 100.0% | 96.8% |
| 4542774 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.90 | 82.0 | 8.47e-01 | 99.2% | 100.0% |
| 4336156 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.90 | 82.0 | 8.46e-01 | 98.4% | 100.0% |
| 3387590 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.89 | 77.0 | 8.06e-01 | 100.0% | 98.3% |
| 2392242 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.89 | 71.0 | 7.51e-01 | 95.3% | 92.0% |
| 2492036 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.89 | 82.0 | 8.16e-01 | 100.0% | 93.8% |
| 4633559 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.88 | 83.0 | 8.34e-01 | 100.0% | 96.9% |
| 4606763 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.88 | 79.0 | 8.17e-01 | 100.0% | 99.2% |
| 4650306 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.88 | 74.0 | 7.66e-01 | 93.7% | 92.5% |
| 1871497 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.88 | 77.0 | 7.96e-01 | 100.0% | 97.5% |
| 4508401 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.87 | 80.0 | 8.14e-01 | 100.0% | 98.4% |
| 2325189 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.86 | 83.0 | 8.06e-01 | 100.0% | 94.9% |
| 4287244 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.86 | 77.0 | 8.00e-01 | 97.6% | 99.2% |
| 1871494 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.86 | 72.0 | 7.37e-01 | 93.7% | 90.9% |
| 4047098 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.86 | 74.0 | 7.62e-01 | 93.7% | 94.2% |
| 4934002 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.86 | 79.0 | 7.90e-01 | 100.0% | 94.6% |
| 143428 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.86 | 76.0 | 7.86e-01 | 100.0% | 99.2% |
| 3387600 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.85 | 71.0 | 7.35e-01 | 93.7% | 91.7% |
| 2492033 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.85 | 79.0 | 7.61e-01 | 96.9% | 88.6% |
| 4976500 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.85 | 78.0 | 7.85e-01 | 100.0% | 96.1% |
| 5039026 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.85 | 69.0 | 7.17e-01 | 94.5% | 90.0% |
| 5977 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.85 | 70.0 | 7.26e-01 | 93.7% | 91.7% |
| 2987540 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.85 | 71.0 | 7.06e-01 | 95.3% | 85.4% |
| 4315973 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.84 | 73.0 | 7.45e-01 | 93.7% | 92.0% |
| 4991675 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.83 | 77.0 | 7.76e-01 | 100.0% | 98.4% |
| 4860663 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.83 | 71.0 | 6.85e-01 | 95.3% | 80.7% |
| 4251800 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.83 | 75.0 | 7.43e-01 | 100.0% | 91.5% |
| 2522057 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.83 | 70.0 | 7.18e-01 | 95.3% | 91.1% |
| 4956740 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.83 | 77.0 | 7.77e-01 | 98.4% | 98.4% |
| 4102438 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.83 | 70.0 | 7.18e-01 | 93.7% | 92.5% |
| 4929645 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.82 | 75.0 | 7.58e-01 | 98.4% | 97.6% |
| 144176 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.82 | 72.0 | 7.29e-01 | 97.6% | 94.4% |
| 3685634 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.82 | 70.0 | 6.40e-01 | 89.8% | 91.9% |
| 3256903 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.82 | 77.0 | 7.58e-01 | 100.0% | 97.0% |
| 3963789 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.82 | 69.0 | 7.13e-01 | 94.5% | 94.2% |
| 4050655 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.81 | 73.0 | 7.24e-01 | 100.0% | 92.3% |
| 4460660 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.81 | 75.0 | 7.40e-01 | 98.4% | 91.9% |
| 159555 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.81 | 73.0 | 7.30e-01 | 100.0% | 94.5% |
| 4591776 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.81 | 72.0 | 7.16e-01 | 98.4% | 91.5% |
| 3478160 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.81 | 75.0 | 7.52e-01 | 98.4% | 99.2% |
| 5010672 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.81 | 71.0 | 7.31e-01 | 96.1% | 98.3% |
| 3574882 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.80 | 75.0 | 7.34e-01 | 100.0% | 95.7% |
| 3798355 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.80 | 75.0 | 7.30e-01 | 100.0% | 94.3% |
| 1013950 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.80 | 70.0 | 7.20e-01 | 98.4% | 96.7% |
| 3223650 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.80 | 75.0 | 7.19e-01 | 100.0% | 95.9% |
| 3625037 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.80 | 75.0 | 7.38e-01 | 100.0% | 100.0% |
| 3407531 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.80 | 72.0 | 7.10e-01 | 96.1% | 89.6% |
| 3787700 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.80 | 73.0 | 6.80e-01 | 97.6% | 100.0% |
| 2878142 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.80 | 70.0 | 7.15e-01 | 100.0% | 96.7% |
| 3789625 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.79 | 74.0 | 7.30e-01 | 100.0% | 100.0% |
| 3873544 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.79 | 74.0 | 7.33e-01 | 100.0% | 97.8% |
| 3251045 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.79 | 74.0 | 6.94e-01 | 100.0% | 83.1% |
| 3704507 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.79 | 74.0 | 7.21e-01 | 100.0% | 97.8% |
| 4014655 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.79 | 74.0 | 7.07e-01 | 100.0% | 97.2% |
| 3503502 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.79 | 73.0 | 7.26e-01 | 98.4% | 100.0% |
| 3653644 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.79 | 73.0 | 6.64e-01 | 100.0% | 93.9% |
| 3388280 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.79 | 66.0 | 6.76e-01 | 97.6% | 93.3% |
| 3412152 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.79 | 73.0 | 7.20e-01 | 100.0% | 96.3% |
| 3244229 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.79 | 72.0 | 7.34e-01 | 98.4% | 100.0% |
| 3921654 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.78 | 73.0 | 7.23e-01 | 100.0% | 97.7% |
| 3782606 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.78 | 72.0 | 6.89e-01 | 98.4% | 92.4% |
| 3596476 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.78 | 72.0 | 6.93e-01 | 99.2% | 100.0% |
| 3744268 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.78 | 72.0 | 7.05e-01 | 98.4% | 100.0% |
| 3715457 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.78 | 71.0 | 6.68e-01 | 97.6% | 98.0% |
| 2141304 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.78 | 70.0 | 6.99e-01 | 96.1% | 94.7% |
| 3230926 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.77 | 70.0 | 6.95e-01 | 97.6% | 93.8% |
| 3614237 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.77 | 70.0 | 6.82e-01 | 96.1% | 98.5% |
| 3624708 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.77 | 72.0 | 7.06e-01 | 100.0% | 95.6% |
| 3719897 | 227.1.1.18 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DUF7881_C | 0.76 | 68.0 | 6.92e-01 | 97.6% | 96.8% |
| 3932752 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.76 | 67.0 | 6.84e-01 | 96.9% | 96.0% |
| 3934036 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.76 | 67.0 | 6.93e-01 | 93.7% | 99.2% |
| 3789624 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.75 | 68.0 | 6.55e-01 | 95.3% | 92.1% |
| 1178584 | 227.1.1.13 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_DNAp_acc | 0.75 | 70.0 | 6.66e-01 | 100.0% | 100.0% |
| 3625038 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.75 | 67.0 | 6.51e-01 | 95.3% | 92.1% |
| 3932751 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.75 | 69.0 | 6.88e-01 | 100.0% | 99.2% |
| 3788671 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.74 | 66.0 | 6.04e-01 | 96.1% | 94.5% |
| 3791518 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.74 | 62.0 | 6.45e-01 | 93.7% | 93.3% |
| 3702817 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.72 | 64.0 | 6.35e-01 | 95.3% | 94.0% |
| 1924009 | 227.1.1.10 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_PAP | 0.66 | 58.0 | 5.80e-01 | 96.1% | 92.5% |
| 1178585 | 227.1.1.13 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_DNAp_acc | 0.66 | 57.0 | 5.59e-01 | 96.1% | 94.3% |
| 5027635 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.51 | 34.0 | 3.70e-01 | 88.2% | 79.6% |