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js4906-25-2-S21_Prophage_curated_prodigal-single.1__X__X__00075
Bact-Virjs4906-25-2-S21_Prophage_curated_prodigal-single.1__X__X__00075
Identity
- Kingdom:
- phage
Quality
94.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-56
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1zavA01 | 3.30.70.1730 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein L10, N-terminal RNA-binding domain | 0.63 | 52.0 | 4.05e-01 | 100.0% | 83.0% |
| 1epfA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 43.0 | 3.54e-01 | 83.3% | 60.4% |
| 3afgA03 | 2.60.120.380 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 45.0 | 3.66e-01 | 90.7% | 49.0% |
| 3ktaA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 48.0 | 3.38e-01 | 98.1% | 73.8% |
| 2basB01 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.54 | 41.0 | 2.76e-01 | 83.3% | 38.5% |
| 2posA00 | 1.10.239.10 | Mainly Alpha › Orthogonal Bundle › Beta-cryptogein › Elicitin domain | 0.53 | 41.0 | 3.60e-01 | 92.6% | 88.3% |
| 6qj2A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 46.0 | 2.81e-01 | 98.1% | 35.7% |
| 3ub0A02 | 3.30.70.3540 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nsp8 replicase, head domain | 0.53 | 40.0 | 3.53e-01 | 90.7% | 55.4% |
| 2m3lA00 | 3.30.240.40 | Alpha Beta › 2-Layer Sandwich › CRO Repressor › E6 early regulatory protein | 0.51 | 38.0 | 3.49e-01 | 83.3% | 61.8% |
| 3r4iA02 | 6.10.140.960 | Special › Helix non-globular › Helix Hairpins › | 0.50 | 34.0 | 3.37e-01 | 72.2% | 65.0% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3846833 | 242.2.1.6 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_end_N2 | 0.65 | 51.0 | 4.51e-01 | 90.7% | 83.5% |
| 3922247 | 242.2.1.6 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_end_N2 | 0.64 | 43.0 | 4.62e-01 | 81.5% | 84.4% |
| 4267139 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 45.0 | 4.46e-01 | 83.3% | 82.5% |
| 3948638 | 223.8.1.4 ↗ | a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain › GAPES3 | 0.57 | 40.0 | 2.82e-01 | 74.1% | 36.9% |
| 3286213 | 327.6.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like | 0.54 | 39.0 | 3.12e-01 | 77.8% | 79.1% |
| 3415405 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.54 | 47.0 | 2.74e-01 | 96.3% | 19.6% |
| 3600238 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 47.0 | 2.79e-01 | 98.1% | 32.4% |
| 4537323 | 4952.1.1.2 ↗ | alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › Lyase_aromatic | 0.53 | 42.0 | 2.75e-01 | 90.7% | 41.9% |
| 3715876 | 2004.1.1.481 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_29 | 0.53 | 46.0 | 2.77e-01 | 98.1% | 32.8% |
| 3624854 | 376.1.2.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 | 0.52 | 42.0 | 3.62e-01 | 94.4% | 88.4% |
| 3412176 | 174.1.1.1 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin | 0.51 | 42.0 | 3.24e-01 | 100.0% | 86.4% |
| 3611163 | 2004.1.1.480 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_29 | 0.50 | 41.0 | 2.46e-01 | 92.6% | 43.1% |