←Back to structures
js4906-25-2-S21_Prophage_curated_prodigal-single.1__X__X__00112
Bact-Virjs4906-25-2-S21_Prophage_curated_prodigal-single.1__X__X__00112
Identity
- Kingdom:
- phage
Quality
84.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 58-148
Domain cluster:
rep: NODE_12_length_310542_cov_175.846709.1__X__X__00121__D30-121
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.75 | 41.0 | 4.64e-01 | 70.3% | 71.0% |
| 2vqeE01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.70 | 46.0 | 5.37e-01 | 90.1% | 95.3% |
| 2gaiA03 | 2.70.20.10 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 | 0.66 | 52.0 | 4.65e-01 | 82.4% | 70.7% |
| 6lofA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.65 | 47.0 | 3.84e-01 | 74.7% | 47.5% |
| 2q03A00 | 2.40.350.10 | Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like | 0.65 | 51.0 | 4.46e-01 | 83.5% | 99.2% |
| 6f1uK02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.59 | 41.0 | 3.56e-01 | 72.5% | 62.1% |
| 2eenA00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.59 | 40.0 | 3.24e-01 | 70.3% | 51.4% |
| 2rs7A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.58 | 41.0 | 4.44e-01 | 73.6% | 93.2% |
| 7a0hA02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.57 | 45.0 | 3.68e-01 | 85.7% | 54.6% |
| 5aj3Q00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 43.0 | 4.06e-01 | 98.9% | 67.9% |
| 4kghA00 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.56 | 48.0 | 3.77e-01 | 94.5% | 60.6% |
| 3fhwA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 48.0 | 4.73e-01 | 97.8% | 90.9% |
| 2xzmE01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 48.0 | 4.42e-01 | 97.8% | 90.5% |
| 3icsA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 36.0 | 2.69e-01 | 70.3% | 48.8% |
| 1tzzB01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.54 | 44.0 | 4.06e-01 | 90.1% | 68.9% |
| 1s5aB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 42.0 | 3.63e-01 | 93.4% | 53.8% |
| 3soyA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 40.0 | 3.41e-01 | 93.4% | 50.7% |
| 1b7eA01 | 3.90.350.10 | Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 | 0.53 | 38.0 | 2.79e-01 | 75.8% | 28.9% |
| 2ebmA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.53 | 38.0 | 3.39e-01 | 75.8% | 78.9% |
| 3f1zI00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 45.0 | 4.15e-01 | 100.0% | 75.9% |
| 2w3sB04 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.51 | 38.0 | 2.92e-01 | 79.1% | 69.1% |
| 4i0kA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 35.0 | 3.52e-01 | 72.5% | 86.3% |
| 3qt2A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 42.0 | 3.96e-01 | 92.3% | 90.3% |
| 4ec6A00 | 3.10.450.540 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 33.0 | 3.12e-01 | 92.3% | 55.0% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5036880 | 330.1.1.35 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › LeuA_dimer | 0.69 | 49.0 | 5.58e-01 | 93.4% | 97.1% |
| 4289288 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.66 | 50.0 | 4.41e-01 | 83.5% | 56.2% |
| 3246221 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.65 | 45.0 | 3.43e-01 | 70.3% | 100.0% |
| 875 | 9.13.1.3 ↗ | beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › DUF3224 | 0.65 | 51.0 | 4.46e-01 | 83.5% | 99.2% |
| 4204001 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.64 | 49.0 | 4.16e-01 | 81.3% | 68.0% |
| 4975146 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.63 | 53.0 | 4.58e-01 | 89.0% | 100.0% |
| 4935307 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.63 | 30.0 | 3.25e-01 | 98.9% | 50.0% |
| 3839111 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.62 | 48.0 | 4.84e-01 | 98.9% | 83.3% |
| 4113222 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.62 | 47.0 | 4.09e-01 | 81.3% | 67.9% |
| 4106730 | 264.2.1.1 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac | 0.61 | 45.0 | 3.95e-01 | 78.0% | 90.4% |
| 5000965 | 512.1.1.0 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) | 0.60 | 42.0 | 4.22e-01 | 87.9% | 72.2% |
| 3519929 | 243.1.1.2 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 | 0.60 | 42.0 | 3.69e-01 | 93.4% | 50.8% |
| 3930653 | 243.3.1.1 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin | 0.59 | 40.0 | 4.11e-01 | 93.4% | 71.1% |
| 3803688 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.59 | 41.0 | 3.41e-01 | 70.3% | 46.5% |
| 5011932 | 330.2.1.5 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 | 0.58 | 45.0 | 4.30e-01 | 82.4% | 74.3% |
| 4807965 | 2.1.1.4 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 | 0.57 | 44.0 | 4.28e-01 | 96.7% | 74.5% |
| 3499841 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.57 | 40.0 | 4.09e-01 | 92.3% | 74.4% |
| 3931594 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.56 | 41.0 | 4.20e-01 | 76.9% | 78.9% |
| 4600806 | 2.1.1.4 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 | 0.56 | 42.0 | 3.99e-01 | 97.8% | 66.4% |
| 3707903 | 2.1.1.4 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 | 0.55 | 42.0 | 3.37e-01 | 97.8% | 41.1% |
| 3819309 | 330.1.1.5 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM | 0.55 | 40.0 | 4.12e-01 | 87.9% | 81.2% |
| 4330094 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.55 | 41.0 | 4.15e-01 | 86.8% | 78.9% |
| 5020456 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.55 | 48.0 | 4.50e-01 | 95.6% | 89.1% |
| 4976527 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.55 | 44.0 | 4.02e-01 | 89.0% | 91.2% |
| 3915626 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.54 | 40.0 | 4.00e-01 | 76.9% | 92.6% |
| 4600598 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 47.0 | 4.38e-01 | 96.7% | 81.7% |
| 4771028 | 271.1.1.1 ↗ | beta barrels › GFP-like › GFP-like › GFP-like › GFP | 0.52 | 29.0 | 3.48e-01 | 78.0% | 81.0% |
| 4990857 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.52 | 42.0 | 3.00e-01 | 91.2% | 85.1% |
| 5078009 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.52 | 43.0 | 2.88e-01 | 91.2% | 82.3% |
| 3937984 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.51 | 43.0 | 4.20e-01 | 91.2% | 88.0% |
| 3451025 | 243.3.1.19 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 | 0.51 | 39.0 | 3.78e-01 | 93.4% | 73.0% |
| 4004011 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.51 | 40.0 | 3.76e-01 | 83.5% | 90.9% |
| 3483729 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.51 | 42.0 | 3.85e-01 | 91.2% | 95.8% |
| 4137219 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.51 | 45.0 | 4.36e-01 | 98.9% | 96.0% |
| 4297447 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.51 | 42.0 | 3.67e-01 | 92.3% | 59.3% |
| 5043294 | 504.1.1.0 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB | 0.50 | 42.0 | 3.78e-01 | 92.3% | 79.2% |
| 3824401 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.50 | 45.0 | 4.06e-01 | 97.8% | 77.2% |
| 3780194 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.50 | 42.0 | 3.08e-01 | 92.3% | 33.9% |
| 4943914 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.50 | 40.0 | 2.76e-01 | 90.1% | 25.2% |
| 5056410 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.50 | 40.0 | 2.87e-01 | 91.2% | 77.5% |
| 3565104 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.50 | 43.0 | 2.49e-01 | 94.5% | 70.7% |
D2
medium
residues 1-54