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js4906-25-2-S21_Prophage_curated_prodigal-single.1__X__X__00122
Bact-Virjs4906-25-2-S21_Prophage_curated_prodigal-single.1__X__X__00122
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-125
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04055.28 best | Radical_SAM | 31.0 | 3.90e-07 | 84.8% | 56.0% |
CATH (50)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4m7tA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.74 | 60.0 | 4.73e-01 | 96.0% | 43.5% |
| 4o1eB00 | 3.20.20.20 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like | 0.65 | 47.0 | 3.61e-01 | 90.4% | 34.5% |
| 3if5A02 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.65 | 43.0 | 5.00e-01 | 92.0% | 95.5% |
| 1shuX00 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.64 | 53.0 | 4.71e-01 | 88.8% | 84.5% |
| 1gz1A00 | 3.20.20.40 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 1, 4-beta cellobiohydrolase | 0.64 | 56.0 | 4.03e-01 | 96.0% | 80.7% |
| 1amiA02 | 3.40.1060.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aconitase; Domain 2 › Aconitase, Domain 2 | 0.63 | 40.0 | 4.24e-01 | 81.6% | 71.7% |
| 4kp1A01 | 3.30.499.10 | Alpha Beta › 2-Layer Sandwich › Aconitase; domain 3 › Aconitase, domain 3 | 0.62 | 41.0 | 3.17e-01 | 82.4% | 30.6% |
| 6m37B01 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.62 | 45.0 | 4.95e-01 | 97.6% | 96.9% |
| 1vc1A00 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.60 | 48.0 | 5.08e-01 | 99.2% | 96.4% |
| 1yacA00 | 3.40.50.850 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like | 0.60 | 50.0 | 4.28e-01 | 90.4% | 75.0% |
| 4e69A00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.59 | 53.0 | 3.97e-01 | 97.6% | 70.0% |
| 5bt8A02 | 3.40.50.1260 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate kinase, N-terminal domain | 0.59 | 52.0 | 4.33e-01 | 97.6% | 83.6% |
| 3g23A02 | 3.50.30.60 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › LD-carboxypeptidase A C-terminal domain-like | 0.58 | 43.0 | 4.63e-01 | 91.2% | 91.4% |
| 1zd9A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 48.0 | 4.39e-01 | 88.8% | 81.9% |
| 3av0A01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.58 | 46.0 | 3.72e-01 | 96.0% | 43.2% |
| 3obwA03 | 3.30.1330.30 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 | 0.58 | 34.0 | 3.71e-01 | 80.8% | 70.6% |
| 2xgjB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 48.0 | 4.07e-01 | 92.8% | 66.0% |
| 1d8wC00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.56 | 48.0 | 3.42e-01 | 96.0% | 66.8% |
| 3ausA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 49.0 | 3.87e-01 | 97.6% | 65.6% |
| 1lw7A02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 47.0 | 4.36e-01 | 93.6% | 92.4% |
| 2dx6A00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.55 | 45.0 | 4.20e-01 | 89.6% | 93.7% |
| 5bq5B00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 48.0 | 4.24e-01 | 96.8% | 88.8% |
| 1akqA00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.54 | 44.0 | 4.18e-01 | 85.6% | 84.4% |
| 1f8iA00 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.54 | 47.0 | 3.27e-01 | 95.2% | 63.9% |
| 6mp7A01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.54 | 45.0 | 3.37e-01 | 92.0% | 75.4% |
| 7xg9A01 | 3.20.20.220 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.54 | 48.0 | 3.64e-01 | 96.0% | 76.8% |
| 1xrsA00 | 3.20.20.440 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › D-Lysine 5,6-aminomutase alpha subunit | 0.54 | 47.0 | 3.10e-01 | 95.2% | 26.7% |
| 4y9dA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 47.0 | 3.88e-01 | 98.4% | 73.2% |
| 1tzbA02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.53 | 37.0 | 3.56e-01 | 82.4% | 62.6% |
| 1jjyA01 | 3.40.50.2030 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 48.0 | 3.95e-01 | 100.0% | 96.1% |
| 1ii7A01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.53 | 46.0 | 3.70e-01 | 96.0% | 52.2% |
| 4ktwA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.53 | 40.0 | 3.67e-01 | 79.2% | 67.5% |
| 3ejfA00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.53 | 44.0 | 4.01e-01 | 90.4% | 91.6% |
| 2ac2A01 | 3.40.50.1400 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 40.0 | 3.64e-01 | 80.0% | 87.3% |
| 2r6fA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 45.0 | 3.89e-01 | 92.0% | 73.0% |
| 1p9oA00 | 3.40.50.10300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like | 0.52 | 47.0 | 3.68e-01 | 100.0% | 99.3% |
| 7ue1B01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.52 | 35.0 | 3.33e-01 | 76.0% | 58.3% |
| 8c9vA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 45.0 | 3.99e-01 | 94.4% | 97.8% |
| 1qwgA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.52 | 45.0 | 3.61e-01 | 96.0% | 60.2% |
| 3ejgA00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.52 | 42.0 | 3.91e-01 | 89.6% | 86.1% |
| 1j24A00 | 3.40.50.10130 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 41.0 | 4.05e-01 | 84.0% | 81.2% |
| 3bwwA01 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.52 | 45.0 | 3.58e-01 | 95.2% | 86.6% |
| 3kp1A01 | 3.20.20.440 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › D-Lysine 5,6-aminomutase alpha subunit | 0.52 | 44.0 | 3.12e-01 | 95.2% | 59.6% |
| 4l6wA02 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.51 | 46.0 | 3.93e-01 | 100.0% | 78.7% |
| 7k2tA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 44.0 | 3.62e-01 | 96.0% | 61.2% |
| 1jr3A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 43.0 | 3.88e-01 | 93.6% | 92.0% |
| 7jt8I02 | 3.90.190.20 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain | 0.51 | 44.0 | 4.24e-01 | 99.2% | 82.6% |
| 1rvkA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.50 | 45.0 | 3.57e-01 | 100.0% | 49.2% |
| 1zl0B02 | 3.50.30.60 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › LD-carboxypeptidase A C-terminal domain-like | 0.50 | 42.0 | 4.04e-01 | 99.2% | 78.4% |
| 3bxpB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.50 | 44.0 | 3.54e-01 | 100.0% | 95.4% |
ECOD (66)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5063125 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.89 | 82.0 | 6.35e-01 | 100.0% | 49.6% |
| 5035238 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.89 | 83.0 | 6.35e-01 | 100.0% | 47.8% |
| 5038426 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.88 | 84.0 | 6.06e-01 | 100.0% | 41.3% |
| 5082234 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.87 | 82.0 | 6.26e-01 | 100.0% | 48.2% |
| 4999341 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.87 | 82.0 | 6.30e-01 | 99.2% | 51.0% |
| 3973046 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.87 | 82.0 | 5.96e-01 | 100.0% | 42.6% |
| 4945747 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.87 | 82.0 | 5.95e-01 | 100.0% | 50.3% |
| 3289806 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.86 | 82.0 | 5.89e-01 | 100.0% | 42.5% |
| 5019560 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.86 | 82.0 | 5.98e-01 | 100.0% | 97.0% |
| 5076952 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.85 | 81.0 | 6.04e-01 | 100.0% | 46.4% |
| 5077461 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.84 | 80.0 | 6.03e-01 | 100.0% | 46.7% |
| 4933060 | 2002.1.1.221 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DUF5131 | 0.75 | 64.0 | 5.12e-01 | 90.4% | 64.8% |
| 3954289 | 2002.1.1.221 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DUF5131 | 0.75 | 68.0 | 5.45e-01 | 99.2% | 67.5% |
| 1106783 | 2002.1.1.125 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,SPASM | 0.74 | 60.0 | 4.73e-01 | 96.0% | 43.5% |
| 4064511 | 2495.1.1.1 ↗ | a/b three-layered sandwiches › Cell-division inhibitor MinC, N-terminal domain › Cell-division inhibitor MinC, N-terminal domain › Cell-division inhibitor MinC, N-terminal domain › MinC_N | 0.73 | 40.0 | 4.78e-01 | 76.8% | 78.8% |
| 5027395 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.71 | 65.0 | 5.01e-01 | 100.0% | 64.4% |
| 138986 | 2496.1.1.2 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › STAS | 0.66 | 54.0 | 5.41e-01 | 94.4% | 85.2% |
| 5075879 | 2002.1.1.224 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › SPASM | 0.65 | 58.0 | 4.69e-01 | 96.8% | 58.5% |
| 5058422 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.65 | 58.0 | 4.54e-01 | 96.8% | 52.3% |
| 4328835 | 2495.1.1.1 ↗ | a/b three-layered sandwiches › Cell-division inhibitor MinC, N-terminal domain › Cell-division inhibitor MinC, N-terminal domain › Cell-division inhibitor MinC, N-terminal domain › MinC_N | 0.64 | 43.0 | 4.74e-01 | 88.0% | 85.0% |
| 3992096 | 2006.1.6.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like | 0.64 | 53.0 | 4.45e-01 | 88.8% | 91.0% |
| 4934838 | 7542.1.2.1 ↗ | a/b three-layered sandwiches › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain II › Aconitase | 0.64 | 40.0 | 4.29e-01 | 80.0% | 71.8% |
| 5080126 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.63 | 53.0 | 4.00e-01 | 92.0% | 94.4% |
| 4113346 | 2006.1.6.12 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_2 | 0.61 | 51.0 | 4.37e-01 | 92.0% | 90.5% |
| 4956933 | 3979.1.1.0 ↗ | a+b four layers › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain | 0.61 | 35.0 | 4.45e-01 | 77.6% | 100.0% |
| 3955250 | 2496.1.1.2 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › STAS | 0.61 | 45.0 | 4.97e-01 | 98.4% | 98.0% |
| 4995471 | 7529.1.1.0 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like | 0.61 | 51.0 | 4.59e-01 | 90.4% | 93.5% |
| 4984480 | 2002.1.1.25 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HMGL-like | 0.59 | 52.0 | 3.88e-01 | 94.4% | 63.1% |
| 3959968 | 2496.1.1.2 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › STAS | 0.59 | 45.0 | 4.94e-01 | 87.2% | 100.0% |
| 3393333 | 2496.1.1.0 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like | 0.58 | 51.0 | 5.11e-01 | 100.0% | 94.4% |
| 4008718 | 7542.1.2.1 ↗ | a/b three-layered sandwiches › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain II › Aconitase | 0.58 | 45.0 | 4.51e-01 | 92.0% | 80.8% |
| 3900308 | 2496.1.1.2 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › STAS | 0.58 | 48.0 | 4.87e-01 | 98.4% | 92.5% |
| 3708983 | 2007.2.5.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase | 0.58 | 43.0 | 3.78e-01 | 82.4% | 52.1% |
| 3293885 | 2003.1.2.198 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_3 | 0.57 | 38.0 | 4.04e-01 | 72.0% | 76.4% |
| 3701293 | 2004.1.1.16 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf | 0.57 | 48.0 | 4.30e-01 | 88.8% | 79.4% |
| 2834135 | 2003.1.6.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like › Tubulin | 0.57 | 51.0 | 4.11e-01 | 98.4% | 78.3% |
| 4473336 | 2004.1.1.442 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21 | 0.57 | 50.0 | 3.58e-01 | 96.0% | 84.8% |
| 4485485 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.57 | 50.0 | 3.58e-01 | 96.0% | 84.5% |
| 5064120 | 2484.1.1.21 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG | 0.57 | 41.0 | 3.51e-01 | 75.2% | 84.4% |
| 3960396 | 2496.1.1.0 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like | 0.56 | 46.0 | 4.71e-01 | 100.0% | 90.8% |
| 3888613 | 2003.1.6.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like › Tubulin | 0.56 | 49.0 | 3.88e-01 | 97.6% | 74.4% |
| 2771289 | 7570.1.1.1 ↗ | a/b three-layered sandwiches › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › Mur_ligase_C | 0.56 | 45.0 | 4.25e-01 | 100.0% | 70.8% |
| 3976338 | 2004.1.1.308 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 | 0.56 | 48.0 | 3.41e-01 | 92.0% | 84.0% |
| 3597502 | 2003.1.6.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like | 0.56 | 48.0 | 3.77e-01 | 97.6% | 82.4% |
| 4204450 | 2004.1.1.442 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21 | 0.56 | 49.0 | 3.55e-01 | 96.8% | 85.3% |
| 3595374 | 2003.1.6.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like | 0.56 | 48.0 | 4.00e-01 | 97.6% | 79.6% |
| 3385753 | 2004.1.1.45 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MutS_V | 0.56 | 48.0 | 3.79e-01 | 93.6% | 58.8% |
| 4947579 | 2003.1.6.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like › Tubulin | 0.55 | 48.0 | 3.97e-01 | 97.6% | 80.0% |
| 3401452 | 2496.1.1.0 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like | 0.55 | 50.0 | 4.82e-01 | 100.0% | 90.0% |
| 2077495 | 601.2.1.3 ↗ | alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes › Flavodoxin_1 | 0.54 | 44.0 | 4.26e-01 | 85.6% | 89.2% |
| 3493299 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 45.0 | 4.10e-01 | 88.8% | 95.2% |
| 3863266 | 2003.1.6.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like › Tubulin | 0.54 | 47.0 | 3.82e-01 | 98.4% | 98.4% |
| 4991694 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 47.0 | 3.52e-01 | 95.2% | 80.8% |
| 3547002 | 2492.1.1.44 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › APOBEC4 | 0.53 | 48.0 | 3.89e-01 | 100.0% | 70.8% |
| 3212022 | 2006.1.6.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like | 0.53 | 46.0 | 3.99e-01 | 97.6% | 95.0% |
| 4306325 | 2484.1.1.40 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX | 0.53 | 36.0 | 3.45e-01 | 88.8% | 58.7% |
| 3878784 | 7529.1.1.15 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › AKAP_110, PF30680 | 0.53 | 47.0 | 3.74e-01 | 98.4% | 81.6% |
| 3909737 | 2003.1.1.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase | 0.53 | 46.0 | 4.01e-01 | 96.0% | 83.7% |
| 5000001 | 2007.3.1.6 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains › Ligase_CoA_2 | 0.53 | 46.0 | 4.33e-01 | 97.6% | 90.3% |
| 4137234 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.52 | 46.0 | 3.67e-01 | 96.0% | 52.0% |
| 3928585 | 207.1.1.156 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF27094 | 0.52 | 46.0 | 3.84e-01 | 97.6% | 84.0% |
| 4162179 | 2484.1.1.25 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC | 0.51 | 40.0 | 3.73e-01 | 84.0% | 65.8% |
| 5032065 | 2008.1.1.7 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 | 0.51 | 40.0 | 3.91e-01 | 84.8% | 80.7% |
| 3598809 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 38.0 | 3.75e-01 | 77.6% | 81.5% |
| 4126066 | 2484.1.1.40 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX | 0.50 | 36.0 | 3.49e-01 | 77.6% | 64.8% |
| 4118739 | 2484.1.1.40 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX | 0.50 | 36.0 | 3.48e-01 | 77.6% | 64.8% |
D2
medium
residues 126-244
Domain cluster:
rep: LacPavin_0818_WC55_scaffold_56344_prodigal-single.1__X__X__00046__D71-178
CATH (76)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3canA00 | 3.80.30.10 | Alpha Beta › Alpha-Beta Horseshoe › pyruvate-formate lyase- activating enzyme › pyruvate-formate lyase- activating enzyme | 0.77 | 66.0 | 5.93e-01 | 93.3% | 67.7% |
| 6xigA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.73 | 67.0 | 4.91e-01 | 100.0% | 43.9% |
| 3cawA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.69 | 52.0 | 4.21e-01 | 100.0% | 42.2% |
| 2chrA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.69 | 54.0 | 4.47e-01 | 100.0% | 48.5% |
| 4jhmA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.68 | 54.0 | 4.15e-01 | 99.2% | 38.5% |
| 3chvA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.68 | 58.0 | 4.36e-01 | 99.2% | 39.1% |
| 3ddmA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.67 | 54.0 | 4.23e-01 | 100.0% | 42.0% |
| 3bjsA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.66 | 53.0 | 4.12e-01 | 99.2% | 39.9% |
| 2y7eB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.66 | 58.0 | 4.37e-01 | 100.0% | 40.6% |
| 3sqsA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.65 | 53.0 | 4.19e-01 | 100.0% | 41.9% |
| 1b1yA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.65 | 59.0 | 3.90e-01 | 100.0% | 42.4% |
| 3msyA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.65 | 52.0 | 4.18e-01 | 100.0% | 43.0% |
| 2b0cA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.65 | 41.0 | 3.94e-01 | 95.0% | 55.6% |
| 3a21B01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.65 | 58.0 | 4.39e-01 | 99.2% | 48.5% |
| 5csrC00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.65 | 54.0 | 4.35e-01 | 99.2% | 47.7% |
| 1z85B02 | 3.40.1280.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain | 0.64 | 39.0 | 3.64e-01 | 95.0% | 47.7% |
| 3nwrA02 | 3.20.20.110 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Ribulose bisphosphate carboxylase, large subunit, C-terminal domain | 0.63 | 54.0 | 4.06e-01 | 99.2% | 38.8% |
| 3c5qA02 | 3.20.20.10 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase | 0.63 | 54.0 | 4.31e-01 | 95.0% | 54.5% |
| 1gc5A01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.62 | 54.0 | 3.85e-01 | 95.8% | 33.9% |
| 4u3aB00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.62 | 55.0 | 4.16e-01 | 99.2% | 46.9% |
| 3s6dA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.62 | 55.0 | 4.24e-01 | 98.3% | 50.4% |
| 2v6fA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.61 | 55.0 | 3.87e-01 | 96.6% | 67.9% |
| 3wnkA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.61 | 54.0 | 3.95e-01 | 99.2% | 57.3% |
| 4dziB00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.61 | 55.0 | 3.88e-01 | 100.0% | 77.0% |
| 1i60A00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.61 | 54.0 | 4.18e-01 | 100.0% | 46.4% |
| 3qllA00 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.61 | 54.0 | 4.45e-01 | 99.2% | 54.0% |
| 4d8lA00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.61 | 53.0 | 3.96e-01 | 100.0% | 38.4% |
| 4js1A00 | 3.90.1480.20 | Alpha Beta › Alpha-Beta Complex › sialyltransferase cstii, chain A › Glycosyl transferase family 29 | 0.61 | 46.0 | 3.33e-01 | 95.0% | 29.6% |
| 1aa1B02 | 3.20.20.110 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Ribulose bisphosphate carboxylase, large subunit, C-terminal domain | 0.61 | 55.0 | 4.04e-01 | 99.2% | 41.9% |
| 1yoeA00 | 3.90.245.10 | Alpha Beta › Alpha-Beta Complex › Inosine-uridine Nucleoside N-ribohydrolase; Chain A › Ribonucleoside hydrolase-like | 0.60 | 54.0 | 4.05e-01 | 100.0% | 88.1% |
| 3dtyA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.60 | 53.0 | 4.59e-01 | 95.8% | 75.1% |
| 1gw1A00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.60 | 54.0 | 3.82e-01 | 100.0% | 40.8% |
| 2qw5A00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.60 | 54.0 | 3.94e-01 | 100.0% | 46.5% |
| 1fkwA00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.60 | 53.0 | 3.82e-01 | 99.2% | 37.5% |
| 3ezyA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.59 | 51.0 | 5.12e-01 | 92.4% | 100.0% |
| 3mcnB02 | 3.20.20.20 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like | 0.59 | 52.0 | 4.17e-01 | 100.0% | 48.3% |
| 5macA02 | 3.20.20.110 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Ribulose bisphosphate carboxylase, large subunit, C-terminal domain | 0.59 | 54.0 | 3.87e-01 | 99.2% | 46.8% |
| 2qq6A02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.59 | 54.0 | 4.14e-01 | 100.0% | 46.1% |
| 1z8hA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.59 | 51.0 | 4.36e-01 | 96.6% | 79.2% |
| 3moiA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.59 | 54.0 | 4.75e-01 | 100.0% | 91.4% |
| 3h49B00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.59 | 53.0 | 3.94e-01 | 99.2% | 67.6% |
| 2qjjD02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.58 | 51.0 | 4.04e-01 | 100.0% | 46.6% |
| 5ailA00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.57 | 51.0 | 4.50e-01 | 100.0% | 82.2% |
| 1rbaA02 | 3.20.20.110 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Ribulose bisphosphate carboxylase, large subunit, C-terminal domain | 0.57 | 51.0 | 3.85e-01 | 99.2% | 44.7% |
| 3jw8B00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.57 | 51.0 | 3.91e-01 | 99.2% | 74.5% |
| 3q71A00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.57 | 51.0 | 4.30e-01 | 100.0% | 78.3% |
| 1pi3A01 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.57 | 50.0 | 4.36e-01 | 95.8% | 82.6% |
| 3b1nA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.57 | 51.0 | 3.75e-01 | 98.3% | 64.3% |
| 3ceaA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.57 | 49.0 | 4.56e-01 | 94.1% | 84.6% |
| 7wwfA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.56 | 50.0 | 3.88e-01 | 99.2% | 85.4% |
| 4xc6B01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 49.0 | 3.81e-01 | 95.0% | 76.2% |
| 1gehA02 | 3.20.20.110 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Ribulose bisphosphate carboxylase, large subunit, C-terminal domain | 0.56 | 49.0 | 3.74e-01 | 99.2% | 43.8% |
| 4dadA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 45.0 | 4.47e-01 | 94.1% | 81.2% |
| 1lwjA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.56 | 49.0 | 3.64e-01 | 99.2% | 40.5% |
| 5z2xA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 50.0 | 3.63e-01 | 100.0% | 44.4% |
| 5euvA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.55 | 49.0 | 3.74e-01 | 100.0% | 40.4% |
| 4lusA02 | 3.20.20.10 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase | 0.55 | 49.0 | 4.08e-01 | 99.2% | 54.9% |
| 1wraA01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.55 | 49.0 | 3.70e-01 | 100.0% | 50.3% |
| 2oejA02 | 3.20.20.110 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Ribulose bisphosphate carboxylase, large subunit, C-terminal domain | 0.55 | 49.0 | 3.75e-01 | 100.0% | 42.0% |
| 3euwA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 47.0 | 4.72e-01 | 92.4% | 100.0% |
| 3kxpA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.55 | 49.0 | 3.83e-01 | 100.0% | 78.0% |
| 4m1bA00 | 3.20.20.370 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase/deacetylase | 0.55 | 48.0 | 4.05e-01 | 98.3% | 57.0% |
| 3v9pB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 47.0 | 4.02e-01 | 95.8% | 75.7% |
| 4c6sA00 | 3.40.50.10140 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Toll/interleukin-1 receptor homology (TIR) domain | 0.55 | 47.0 | 4.47e-01 | 95.0% | 83.1% |
| 2e7yB00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.54 | 48.0 | 3.76e-01 | 100.0% | 89.6% |
| 2csuA03 | 3.40.50.261 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains | 0.53 | 47.0 | 4.29e-01 | 100.0% | 77.7% |
| 2zauA01 | 3.30.1330.10 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain | 0.53 | 41.0 | 4.03e-01 | 94.1% | 76.2% |
| 3ih5A00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.53 | 46.0 | 3.84e-01 | 95.0% | 93.2% |
| 1y7oB00 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.53 | 47.0 | 4.15e-01 | 100.0% | 82.6% |
| 3u80A00 | 3.40.50.9100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dehydroquinase, class II | 0.52 | 40.0 | 3.96e-01 | 97.5% | 75.6% |
| 3hh8A02 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.52 | 36.0 | 3.50e-01 | 95.0% | 64.1% |
| 3rm5B01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.52 | 46.0 | 3.48e-01 | 100.0% | 46.8% |
| 4rrfA01 | 3.50.80.10 | Alpha Beta › 3-Layer(bba) Sandwich › D-tyrosyl-trna(Tyr) Deacylase; Chain: A; › D-tyrosyl-tRNA(Tyr) deacylase | 0.51 | 42.0 | 4.09e-01 | 89.1% | 85.3% |
| 1yawB01 | 3.30.1330.10 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain | 0.51 | 39.0 | 3.78e-01 | 80.7% | 82.1% |
| 4ad8A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 45.0 | 3.46e-01 | 100.0% | 60.1% |
| 5yw4A00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 45.0 | 3.33e-01 | 100.0% | 69.8% |
ECOD (71)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5082234 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.89 | 83.0 | 6.21e-01 | 100.0% | 45.1% |
| 5051301 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.79 | 74.0 | 5.67e-01 | 100.0% | 52.0% |
| 5053015 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.78 | 74.0 | 5.63e-01 | 100.0% | 50.8% |
| 4955076 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.71 | 65.0 | 4.69e-01 | 100.0% | 67.5% |
| 3613938 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.68 | 53.0 | 3.80e-01 | 96.6% | 29.7% |
| 3829642 | 207.1.1.79 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box | 0.65 | 57.0 | 3.93e-01 | 97.5% | 28.6% |
| 3818762 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.65 | 59.0 | 3.88e-01 | 100.0% | 29.7% |
| 1157724 | 2488.1.1.12 ↗ | a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrans_RNA | 0.64 | 39.0 | 3.68e-01 | 94.1% | 48.6% |
| None | — | 0.64 | 58.0 | 3.90e-01 | 100.0% | 31.7% | |
| None | — | 0.64 | 58.0 | 3.82e-01 | 100.0% | 29.4% | |
| 4618618 | 2002.1.1.15 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Trp_syntA | 0.64 | 52.0 | 4.07e-01 | 99.2% | 41.6% |
| 3802389 | 207.1.1.79 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box | 0.64 | 58.0 | 3.84e-01 | 100.0% | 31.0% |
| 3388454 | 2002.1.1.125 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,SPASM | 0.63 | 57.0 | 4.35e-01 | 100.0% | 57.9% |
| 5055516 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.63 | 53.0 | 3.75e-01 | 97.5% | 30.9% |
| 1065861 | 2003.6.1.4 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › ADP_PFK_GK | 0.62 | 55.0 | 3.65e-01 | 95.8% | 26.1% |
| 4990088 | 2002.1.1.15 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Trp_syntA | 0.62 | 53.0 | 4.16e-01 | 100.0% | 44.7% |
| 167501 | 2002.1.1.139 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › BKACE | 0.62 | 51.0 | 3.95e-01 | 98.3% | 39.1% |
| 5051629 | 2007.1.14.7 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › HGD-D | 0.61 | 48.0 | 4.25e-01 | 82.4% | 75.9% |
| 3972136 | 2002.5.1.1 ↗ | a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL | 0.61 | 51.0 | 4.04e-01 | 99.2% | 42.9% |
| 4316609 | 2002.1.1.41 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › A_deaminase | 0.61 | 53.0 | 3.89e-01 | 99.2% | 35.9% |
| 3465560 | 2003.1.5.31 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS | 0.61 | 49.0 | 3.78e-01 | 87.4% | 38.9% |
| 5008595 | 2006.1.6.15 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF58 | 0.61 | 53.0 | 4.61e-01 | 95.0% | 92.8% |
| 5024121 | 2002.1.1.102 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP | 0.60 | 54.0 | 4.30e-01 | 99.2% | 49.4% |
| 3187245 | 7579.1.1.42 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Hydrolase_4 | 0.60 | 53.0 | 4.02e-01 | 97.5% | 78.8% |
| 3258680 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.60 | 53.0 | 3.70e-01 | 96.6% | 54.6% |
| 5035607 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.60 | 51.0 | 4.03e-01 | 99.2% | 45.1% |
| None | — | 0.59 | 54.0 | 3.90e-01 | 99.2% | 62.5% | |
| 4149089 | 2002.1.1.15 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Trp_syntA | 0.59 | 53.0 | 4.20e-01 | 99.2% | 50.2% |
| 3479883 | 246.2.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases | 0.59 | 54.0 | 3.90e-01 | 100.0% | 47.9% |
| 3383785 | 207.1.1.99 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_At5g56370 | 0.59 | 50.0 | 3.40e-01 | 90.8% | 30.5% |
| 4060479 | 2002.1.1.1 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RuBisCO_large | 0.59 | 54.0 | 4.00e-01 | 100.0% | 61.1% |
| 4944963 | 7579.1.1.42 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Hydrolase_4 | 0.59 | 53.0 | 4.08e-01 | 100.0% | 74.5% |
| 4216693 | 2002.1.1.1 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RuBisCO_large | 0.59 | 49.0 | 3.70e-01 | 99.2% | 36.9% |
| 5083231 | 7579.1.1.42 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Hydrolase_4 | 0.59 | 53.0 | 3.95e-01 | 100.0% | 70.8% |
| 3874110 | 2004.1.1.534 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF30386 | 0.59 | 51.0 | 4.13e-01 | 95.0% | 63.6% |
| 4887153 | 2002.1.1.1 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RuBisCO_large | 0.58 | 49.0 | 3.67e-01 | 99.2% | 36.0% |
| 3823655 | 2003.1.5.31 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS | 0.58 | 47.0 | 3.21e-01 | 86.6% | 24.1% |
| 3710871 | 2003.1.1.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase | 0.58 | 50.0 | 3.86e-01 | 96.6% | 82.1% |
| 3111894 | 2002.1.1.1 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RuBisCO_large | 0.57 | 53.0 | 3.79e-01 | 100.0% | 62.2% |
| None | — | 0.57 | 51.0 | 3.56e-01 | 100.0% | 38.2% | |
| 4891019 | 207.1.1.149 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_4, LRR_9 | 0.57 | 47.0 | 4.20e-01 | 99.2% | 63.1% |
| 3265457 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.57 | 51.0 | 3.62e-01 | 100.0% | 37.6% |
| 3251448 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.57 | 52.0 | 3.48e-01 | 100.0% | 28.3% |
| 4930897 | 2002.1.1.73 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT | 0.57 | 50.0 | 3.83e-01 | 100.0% | 76.2% |
| 3194087 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.56 | 50.0 | 3.39e-01 | 100.0% | 48.2% |
| 3948076 | 2007.3.1.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains › Succ_CoA_lig | 0.56 | 48.0 | 4.30e-01 | 94.1% | 71.8% |
| 2753429 | 2003.1.1.153 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase, GDP_Man_Dehyd | 0.56 | 50.0 | 3.63e-01 | 100.0% | 44.4% |
| 2896454 | 7579.1.1.44 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 | 0.56 | 50.0 | 3.85e-01 | 100.0% | 85.9% |
| None | — | 0.55 | 50.0 | 3.58e-01 | 100.0% | 52.1% | |
| 3312833 | 2003.1.8.10 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › MurCD/PglD N-terminal domain-like › NmrA | 0.55 | 41.0 | 4.22e-01 | 93.3% | 80.9% |
| 3877761 | 7579.1.1.6 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 | 0.55 | 48.0 | 3.51e-01 | 97.5% | 71.8% |
| 4944764 | 2007.3.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains | 0.54 | 49.0 | 4.37e-01 | 100.0% | 76.8% |
| 3923915 | 2006.1.6.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like | 0.54 | 46.0 | 4.02e-01 | 94.1% | 91.4% |
| 4994284 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.54 | 48.0 | 4.06e-01 | 99.2% | 81.5% |
| 5072237 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.54 | 48.0 | 4.22e-01 | 99.2% | 91.1% |
| 3834536 | 2007.9.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › TIR | 0.53 | 45.0 | 4.29e-01 | 94.1% | 86.9% |
| 3286834 | 2004.1.1.202 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_28 | 0.53 | 44.0 | 3.76e-01 | 93.3% | 70.7% |
| 1088385 | 2003.1.1.153 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase, GDP_Man_Dehyd | 0.53 | 46.0 | 4.72e-01 | 99.2% | 99.1% |
| 5076344 | 2494.1.1.2 ↗ | a/b three-layered sandwiches › DTD-like › DTD-like (Pfam 02580) › DTD-like (Pfam 02580) › tRNA-Thr_ED | 0.52 | 43.0 | 4.06e-01 | 89.1% | 81.4% |
| 5083434 | 7544.1.1.0 ↗ | a/b three-layered sandwiches › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain | 0.52 | 44.0 | 3.28e-01 | 95.0% | 49.1% |
| 3594205 | 2007.1.14.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Ferrochelatase | 0.52 | 44.0 | 3.93e-01 | 95.0% | 100.0% |
| 4335831 | 7544.1.1.1 ↗ | a/b three-layered sandwiches › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain › Glycos_transf_3 | 0.52 | 45.0 | 3.51e-01 | 95.0% | 62.3% |
| 5038291 | 2007.1.13.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Lumazine synthase › DMRL_synthase | 0.51 | 42.0 | 4.16e-01 | 98.3% | 82.3% |
| 407438 | 2494.1.1.2 ↗ | a/b three-layered sandwiches › DTD-like › DTD-like (Pfam 02580) › DTD-like (Pfam 02580) › tRNA-Thr_ED | 0.51 | 42.0 | 3.95e-01 | 89.1% | 82.1% |
| 4079306 | 2007.1.13.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Lumazine synthase › DMRL_synthase | 0.51 | 41.0 | 3.95e-01 | 95.0% | 74.3% |
| 4185839 | 2007.1.13.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Lumazine synthase › DMRL_synthase | 0.51 | 42.0 | 3.85e-01 | 97.5% | 68.4% |
| 4121942 | 2003.1.1.67 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_10 | 0.50 | 45.0 | 3.36e-01 | 100.0% | 65.5% |
| 4635808 | 2007.1.13.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Lumazine synthase › DMRL_synthase | 0.50 | 42.0 | 3.86e-01 | 97.5% | 69.0% |
| 3834388 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.50 | 44.0 | 3.59e-01 | 96.6% | 60.4% |
| 4330472 | 2007.1.13.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Lumazine synthase › DMRL_synthase | 0.50 | 42.0 | 3.85e-01 | 97.5% | 69.0% |
| 4398307 | 2007.1.13.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Lumazine synthase › DMRL_synthase | 0.50 | 42.0 | 3.85e-01 | 97.5% | 69.5% |