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js4906-25-2-S21_Prophage_curated_prodigal-single.1__X__X__00142
Bact-Virjs4906-25-2-S21_Prophage_curated_prodigal-single.1__X__X__00142
Identity
- Kingdom:
- phage
Quality
80.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 35-146
D2
high
residues 153-230
Domain cluster:
rep: MT234670.1__QIW88495.1__X__00062__D259-340
D3
high
residues 236-370
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4avrA00 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.69 | 47.0 | 5.59e-01 | 98.5% | 100.0% |
| 3hu1A01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.69 | 43.0 | 5.06e-01 | 100.0% | 88.5% |
| 1qcsA01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.68 | 41.0 | 5.04e-01 | 98.5% | 97.6% |
| 5ja1B00 | 3.90.820.10 | Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | 0.62 | 23.0 | 3.18e-01 | 76.3% | 65.2% |
| 1u1sA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 29.0 | 4.06e-01 | 98.5% | 90.9% |
| 2kqaA00 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.62 | 49.0 | 5.21e-01 | 98.5% | 94.2% |
| 1zc1A01 | 2.40.40.50 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › Ubiquitin fusion degradation protein UFD1, N-terminal domain | 0.61 | 43.0 | 4.80e-01 | 100.0% | 94.2% |
| 1xeeA01 | 3.10.20.390 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Chemotaxis-inhibiting protein CHIPS | 0.61 | 34.0 | 4.25e-01 | 97.8% | 90.2% |
| 1y96A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 31.0 | 3.83e-01 | 100.0% | 82.6% |
| 2greF02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.57 | 34.0 | 4.21e-01 | 98.5% | 100.0% |
| 2d7eA01 | 3.40.1440.60 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › PriA, 3(prime) DNA-binding domain | 0.57 | 26.0 | 3.16e-01 | 93.3% | 63.3% |
| 3irzA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 26.0 | 3.00e-01 | 94.1% | 57.6% |
| 1hpgA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.55 | 29.0 | 3.31e-01 | 77.8% | 66.7% |
| 4kncA02 | 2.60.120.1380 | Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module | 0.55 | 32.0 | 3.48e-01 | 100.0% | 67.5% |
| 6m3yA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 27.0 | 2.91e-01 | 94.8% | 53.0% |
| 1yn3A00 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.54 | 32.0 | 3.71e-01 | 100.0% | 80.6% |
| 1wp5A00 | 2.120.10.90 | Mainly Beta › 6 Propeller › Neuraminidase › DNA gyrase/topoisomerase IV, subunit A, C-terminal | 0.54 | 37.0 | 2.76e-01 | 100.0% | 29.2% |
| 6vtmB00 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.54 | 32.0 | 3.68e-01 | 100.0% | 81.2% |
| 4a0tA03 | 2.60.320.30 | Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › | 0.54 | 32.0 | 3.81e-01 | 99.3% | 87.8% |
| 5mj6A03 | 2.60.40.1910 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 28.0 | 3.52e-01 | 100.0% | 83.7% |
| 2e12A00 | 2.30.30.720 | Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) | 0.54 | 32.0 | 3.83e-01 | 97.8% | 87.1% |
| 4iajA00 | 3.30.1490.390 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 | 0.53 | 23.0 | 3.02e-01 | 80.0% | 69.7% |
| 2h7aA01 | 3.10.510.20 | Alpha Beta › Roll › NE1680-like fold › YcgL domain | 0.53 | 24.0 | 3.00e-01 | 80.0% | 69.7% |
| 4h8wC02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 27.0 | 3.48e-01 | 100.0% | 88.0% |
| 1zq1A01 | 2.30.30.520 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 28.0 | 3.53e-01 | 98.5% | 90.9% |
| 2j4xA01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.51 | 32.0 | 3.38e-01 | 100.0% | 67.7% |
| 1qr4A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 28.0 | 3.35e-01 | 100.0% | 80.5% |
| 2m4vA00 | 2.20.28.270 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase-binding protein A | 0.50 | 24.0 | 2.94e-01 | 72.6% | 68.8% |
| 2piaA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.50 | 35.0 | 3.89e-01 | 100.0% | 93.3% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3010131 | 1.1.2.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 | 0.70 | 52.0 | 5.74e-01 | 100.0% | 95.3% |
| 4995354 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.68 | 43.0 | 5.25e-01 | 99.3% | 100.0% |
| 3617423 | 1.1.2.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › IML1_N | 0.68 | 46.0 | 5.32e-01 | 100.0% | 96.8% |
| 5079577 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.68 | 41.0 | 5.10e-01 | 96.3% | 100.0% |
| 3597196 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.65 | 43.0 | 5.08e-01 | 99.3% | 95.8% |
| 3742309 | 3792.1.1.2 ↗ | beta sandwiches › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › APC1_3rd | 0.65 | 25.0 | 3.32e-01 | 92.6% | 62.5% |
| 3933010 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.65 | 46.0 | 5.18e-01 | 99.3% | 94.3% |
| 5042283 | 208.1.1.56 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › MazE_antitoxin | 0.65 | 45.0 | 3.40e-01 | 100.0% | 31.1% |
| 4607187 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.65 | 42.0 | 4.91e-01 | 99.3% | 92.6% |
| None | — | 0.64 | 42.0 | 4.90e-01 | 99.3% | 95.7% | |
| 3941093 | 3792.1.1.0 ↗ | beta sandwiches › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain | 0.64 | 25.0 | 3.00e-01 | 92.6% | 52.6% |
| 3596623 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.64 | 42.0 | 5.03e-01 | 98.5% | 100.0% |
| 3248572 | 72.1.1.0 ↗ | beta sandwiches › gamma-Crystallin-like › gamma-Crystallin-like › gamma-Crystallin-like | 0.63 | 30.0 | 3.67e-01 | 100.0% | 71.2% |
| 4217174 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.62 | 32.0 | 4.17e-01 | 99.3% | 92.9% |
| 1886098 | 4076.2.1.1 ↗ | a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › MbtH | 0.62 | 23.0 | 3.18e-01 | 76.3% | 65.2% |
| 3503373 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.61 | 28.0 | 3.49e-01 | 94.8% | 68.2% |
| 1568967 | 1.1.2.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › KWL1 | 0.60 | 51.0 | 4.54e-01 | 98.5% | 66.1% |
| 4932697 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 30.0 | 4.18e-01 | 100.0% | 100.0% |
| 4940416 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.59 | 32.0 | 3.97e-01 | 99.3% | 86.3% |
| 5030538 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.59 | 28.0 | 3.56e-01 | 94.8% | 75.0% |
| 3507639 | 4.1.1.219 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM12_LSM | 0.59 | 30.0 | 4.16e-01 | 99.3% | 97.1% |
| 4890345 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.59 | 34.0 | 4.15e-01 | 100.0% | 90.6% |
| 4026408 | 4.1.1.219 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM12_LSM | 0.58 | 29.0 | 3.31e-01 | 98.5% | 63.0% |
| 4960934 | 11.1.4.23 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg | 0.57 | 27.0 | 3.32e-01 | 93.3% | 71.2% |
| 3972951 | 1.1.7.88 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 | 0.57 | 31.0 | 3.98e-01 | 99.3% | 94.7% |
| 5055097 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.56 | 27.0 | 3.40e-01 | 94.8% | 77.3% |
| 4961041 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.56 | 27.0 | 3.38e-01 | 94.1% | 73.8% |
| 3224349 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.55 | 30.0 | 3.44e-01 | 98.5% | 71.6% |
| 5063052 | 11.1.1.1410 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CarboxypepD_reg | 0.55 | 26.0 | 3.11e-01 | 94.8% | 64.4% |
| 2321850 | 11.1.1.245 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_6 | 0.55 | 28.0 | 3.49e-01 | 100.0% | 80.2% |
| 2709685 | 221.1.1.17 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Stap_Strp_tox_C | 0.54 | 33.0 | 3.67e-01 | 100.0% | 75.7% |
| 5068997 | 11.1.4.23 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg | 0.54 | 26.0 | 3.17e-01 | 93.3% | 71.2% |
| 224066 | 822.3.1.1 ↗ | a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 › DUF4649 | 0.53 | 23.0 | 2.96e-01 | 79.3% | 67.5% |
| 3993545 | 384.1.1.1 ↗ | few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI | 0.53 | 23.0 | 3.12e-01 | 95.6% | 81.7% |
| 4032516 | 221.1.1.17 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Stap_Strp_tox_C | 0.52 | 31.0 | 3.51e-01 | 99.3% | 78.0% |
| 3619202 | 10.10.1.0 ↗ | beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) | 0.52 | 26.0 | 3.15e-01 | 94.1% | 72.9% |
| 4994169 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.51 | 27.0 | 3.16e-01 | 93.3% | 73.3% |