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js4906-25-2-S21_Prophage_curated_prodigal-single.1__X__X__00162

Bact-Vir

js4906-25-2-S21_Prophage_curated_prodigal-single.1__X__X__00162

Identity

Kingdom:
phage

Quality

80.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 132-214
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bb6A02 2.170.130.30 Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › 0.61 53.0 4.94e-01 98.8% 93.4%
2jxxA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 50.0 5.13e-01 100.0% 100.0%
3u7zA00 2.170.130.30 Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › 0.59 50.0 4.85e-01 98.8% 96.9%
2wxfA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 51.0 4.55e-01 97.6% 73.1%
4a55A01 3.10.20.770 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.59 51.0 3.53e-01 100.0% 29.4%
3hhmA03 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 51.0 4.32e-01 98.8% 77.3%
4kv2A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 49.0 4.83e-01 97.6% 98.9%
1se9A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 49.0 4.68e-01 97.6% 87.1%
1mfwA00 3.10.20.230 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Doublecortin domain 0.57 49.0 4.60e-01 98.8% 77.4%
2y3aA01 3.10.20.770 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 49.0 3.48e-01 100.0% 32.9%
1j0gA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 47.0 4.63e-01 98.8% 84.8%
6sjqA00 3.10.20.650 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.56 48.0 4.40e-01 97.6% 78.3%
2kkcA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 50.0 4.71e-01 98.8% 99.0%
1ef5A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 49.0 4.84e-01 98.8% 97.7%
1we6A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 49.0 4.46e-01 100.0% 73.0%
5mpoB00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.56 48.0 4.78e-01 95.2% 94.0%
4bfrB02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 48.0 4.21e-01 97.6% 68.0%
7bi2A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 48.0 4.43e-01 97.6% 75.7%
3p42A01 3.10.20.700 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 47.0 4.60e-01 96.4% 86.7%
1x1mA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 46.0 4.33e-01 96.4% 81.3%
3ah7A00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.55 48.0 4.42e-01 96.4% 93.6%
6vtmB00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 46.0 4.43e-01 96.4% 99.0%
2c7hA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 45.0 4.51e-01 100.0% 90.7%
2z8lA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 45.0 4.16e-01 98.8% 88.9%
1t0yA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 46.0 4.51e-01 97.6% 91.1%
4efoA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 45.0 4.50e-01 100.0% 88.8%
2ekiA00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.53 45.0 4.34e-01 98.8% 83.9%
2lw6A00 2.60.320.40 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › 0.53 38.0 3.93e-01 100.0% 78.8%
1i42A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 44.0 4.33e-01 100.0% 89.9%
5e7gA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 4.00e-01 86.7% 88.9%
4dlqA01 4.10.1240.10 Few Secondary Structures › Irregular › Hormone receptor fold › GPCR, family 2, extracellular hormone receptor domain 0.51 33.0 3.66e-01 98.8% 91.7%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4291271 221.1.1.38 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Flg_new 0.80 64.0 6.68e-01 98.8% 93.3%
3988635 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.78 61.0 6.66e-01 98.8% 98.6%
3600975 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.64 43.0 4.83e-01 97.6% 95.0%
4574961 221.1.1.21 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ub-RnfH 0.62 51.0 5.06e-01 97.6% 87.1%
3554091 221.1.1.63 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_F1 0.62 54.0 5.03e-01 96.4% 76.2%
3274909 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.61 51.0 5.19e-01 98.8% 95.0%
3266011 221.1.1.44 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD 0.61 51.0 5.15e-01 98.8% 92.8%
3703239 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.61 43.0 4.68e-01 100.0% 95.4%
3254286 221.1.1.44 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD 0.61 50.0 4.92e-01 98.8% 85.2%
3878611 221.1.1.63 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_F1 0.60 53.0 4.98e-01 96.4% 82.0%
3331888 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 51.0 5.14e-01 97.6% 95.3%
3900081 221.1.1.44 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD 0.60 49.0 5.06e-01 98.8% 93.8%
3273348 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.60 51.0 2.90e-01 98.8% 8.3%
3847728 221.1.1.7 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › UBX 0.60 51.0 4.84e-01 100.0% 79.0%
3336219 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.60 48.0 4.85e-01 98.8% 88.2%
3451982 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 51.0 4.98e-01 97.6% 96.7%
3424421 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 52.0 4.98e-01 100.0% 96.8%
3503544 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 50.0 4.63e-01 96.4% 96.4%
3257417 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 49.0 4.48e-01 97.6% 82.5%
3717225 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 50.0 4.74e-01 96.4% 97.0%
5002005 221.1.4.0 a+b two layers › beta-Grasp › Ubiquitin-related › Nqo1 middle domain-like 0.59 44.0 4.70e-01 94.0% 97.1%
3914036 221.1.1.87 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N_2 0.57 49.0 4.63e-01 98.8% 92.4%
160942 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.57 47.0 4.21e-01 97.6% 64.4%
3900729 221.1.1.176 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PF26749 0.57 47.0 4.85e-01 97.6% 98.8%
3562629 221.1.1.113 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_3 0.57 50.0 4.46e-01 100.0% 90.0%
3487190 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.57 48.0 4.66e-01 96.4% 97.9%
3620971 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.57 46.0 4.81e-01 95.2% 100.0%
3869834 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.57 47.0 4.15e-01 98.8% 61.6%
3612584 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.57 49.0 4.49e-01 97.6% 81.8%
3833608 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.56 46.0 4.03e-01 100.0% 58.5%
3629134 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.56 49.0 4.50e-01 98.8% 90.9%
3910146 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.56 45.0 4.63e-01 97.6% 93.8%
3591570 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.56 47.0 4.35e-01 96.4% 97.3%
4023597 221.1.1.94 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › AIP3 0.56 48.0 4.82e-01 98.8% 96.5%
3399206 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.56 47.0 4.75e-01 97.6% 100.0%
3993658 221.1.1.170 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › UBL_ZFAND1 0.56 48.0 4.47e-01 97.6% 78.1%
3546707 221.1.1.181 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PF27687 0.56 46.0 4.69e-01 95.2% 96.2%
3633950 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 48.0 4.69e-01 97.6% 90.0%
3745675 221.1.1.4 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.55 47.0 4.37e-01 98.8% 90.0%
3264170 7579.1.1.0 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.54 47.0 3.03e-01 97.6% 19.8%
3593333 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 45.0 4.57e-01 97.6% 97.5%
4946399 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 46.0 4.60e-01 97.6% 95.3%
5041151 239.1.1.15 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf 0.54 41.0 4.34e-01 97.6% 100.0%
3624737 221.1.1.52 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_2 0.54 46.0 4.61e-01 98.8% 100.0%
4013074 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 46.0 4.13e-01 98.8% 70.8%
2709685 221.1.1.17 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Stap_Strp_tox_C 0.53 45.0 4.21e-01 97.6% 93.5%
3271391 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.53 45.0 4.62e-01 97.6% 100.0%
4959950 239.1.1.15 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf 0.53 42.0 4.25e-01 100.0% 89.4%
3814403 221.1.4.4 a+b two layers › beta-Grasp › Ubiquitin-related › Nqo1 middle domain-like › Ubiq_DUF_assoc 0.53 45.0 4.60e-01 96.4% 98.8%
3605971 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.52 44.0 4.09e-01 96.4% 99.1%
3921571 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.52 44.0 4.37e-01 97.6% 94.1%
3708857 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.52 45.0 4.18e-01 97.6% 97.1%
5041150 239.1.1.15 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf 0.51 38.0 4.06e-01 96.4% 97.1%
3443390 221.1.1.28 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › SOK 0.51 41.0 3.95e-01 96.4% 95.2%
D2 medium residues 1-54
PDB
Domain cluster: representative
D3 medium residues 55-126
PDB
CATH (70)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2f86B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.82 73.0 5.94e-01 97.2% 93.8%
3f14A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.76 65.0 5.54e-01 93.1% 90.2%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.73 62.0 4.85e-01 94.4% 47.7%
4kz1A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.72 65.0 5.23e-01 98.6% 95.6%
2imjD01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.72 59.0 4.79e-01 91.7% 73.2%
1gr0A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.71 53.0 5.07e-01 79.2% 98.8%
5i97C00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.71 63.0 5.10e-01 98.6% 95.6%
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.70 59.0 4.71e-01 94.4% 72.8%
1jkfA03 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.70 53.0 5.71e-01 86.1% 100.0%
3cinA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.69 56.0 4.97e-01 88.9% 100.0%
3cygA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.68 58.0 4.90e-01 93.1% 97.5%
2r76A00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.68 50.0 4.10e-01 77.8% 69.7%
3h51A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 56.0 4.57e-01 93.1% 77.5%
5w8mA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.68 58.0 4.23e-01 94.4% 60.2%
2jq5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 54.0 4.50e-01 87.5% 72.7%
7f13A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 57.0 4.67e-01 97.2% 75.0%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.67 52.0 5.61e-01 98.6% 100.0%
6a5gA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 51.0 4.25e-01 84.7% 84.6%
3cqnB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.67 57.0 4.38e-01 100.0% 42.2%
1vpbA01 3.30.2290.10 Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily 0.66 57.0 4.08e-01 98.6% 37.8%
3qvsA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.66 54.0 4.85e-01 90.3% 70.3%
1jkgA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 56.0 4.63e-01 98.6% 83.5%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.66 52.0 5.55e-01 98.6% 100.0%
3gwrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 53.0 4.45e-01 90.3% 82.7%
2d42A02 3.10.450.380 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 48.0 4.97e-01 90.3% 87.7%
7a0hA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.65 54.0 4.17e-01 95.8% 74.1%
2a15A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 54.0 4.49e-01 94.4% 83.5%
3er7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 53.0 4.45e-01 91.7% 83.7%
6k96B02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.64 53.0 4.81e-01 95.8% 68.0%
3hx8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 53.0 4.55e-01 98.6% 85.9%
3s5tA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.64 56.0 4.41e-01 98.6% 96.7%
3kenA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.63 56.0 3.66e-01 100.0% 60.7%
3ebtA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 52.0 4.37e-01 94.4% 84.7%
1wznA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.63 47.0 5.20e-01 81.9% 100.0%
1dt9A01 3.30.960.10 Alpha Beta › 2-Layer Sandwich › Translation, Eukaryotic Peptide Chain Release Factor Subunit 1; Chain A › eRF1 domain 1 0.62 44.0 3.93e-01 80.6% 51.4%
7c5wA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 47.0 3.79e-01 83.3% 91.9%
1vjhA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 48.0 4.08e-01 90.3% 50.8%
2pzhA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.61 47.0 3.82e-01 81.9% 67.2%
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.61 53.0 4.68e-01 98.6% 99.1%
2kpnA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 49.0 4.85e-01 98.6% 84.4%
5aigA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 49.0 4.18e-01 93.1% 82.3%
5jenA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.60 51.0 4.53e-01 98.6% 98.2%
4e72A01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.60 50.0 4.31e-01 98.6% 96.8%
2okmA00 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 50.0 4.03e-01 95.8% 89.0%
5hdwA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.58 50.0 4.19e-01 100.0% 82.4%
1dpgA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.58 48.0 3.28e-01 98.6% 39.8%
2bngC00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 48.0 4.03e-01 100.0% 77.1%
3irpX02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 49.0 3.90e-01 95.8% 88.5%
6vg1A04 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.57 49.0 4.40e-01 98.6% 83.7%
1qppA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 45.0 3.94e-01 90.3% 89.5%
1hyrC01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.56 46.0 3.49e-01 91.7% 56.1%
1lo7A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.56 44.0 3.53e-01 84.7% 60.7%
3o0lA00 2.60.40.3230 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 41.0 3.61e-01 79.2% 78.0%
4jdzA02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 46.0 3.63e-01 97.2% 88.5%
8egxA04 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.55 46.0 4.19e-01 97.2% 86.1%
5vh2D01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.54 46.0 4.17e-01 98.6% 81.6%
1a6zA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.54 47.0 3.54e-01 98.6% 51.4%
8d40A02 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.54 46.0 4.21e-01 100.0% 89.9%
4bnqB00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.54 44.0 3.28e-01 91.7% 50.0%
5uz8A01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.54 46.0 4.18e-01 100.0% 86.3%
3uc2A00 2.60.40.3340 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4426 0.54 47.0 3.96e-01 98.6% 80.6%
2w35A00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.53 36.0 2.56e-01 70.8% 23.3%
5tfmA02 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.53 44.0 4.07e-01 98.6% 89.1%
6wwdB00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.53 44.0 3.30e-01 94.4% 51.6%
2pndA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 44.0 3.84e-01 98.6% 89.1%
3qt2A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 3.95e-01 93.1% 83.5%
1mu5A01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.52 43.0 3.20e-01 94.4% 60.5%
3nqkA02 2.40.128.440 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14274, DUF4361 0.51 44.0 3.51e-01 100.0% 90.0%
3nqzA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 42.0 4.01e-01 94.4% 85.7%
1ym5A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.50 38.0 3.03e-01 83.3% 71.5%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5068089 283.1.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase 0.80 72.0 6.11e-01 100.0% 80.0%
169507 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.76 64.0 5.53e-01 93.1% 90.2%
4947993 283.2.1.19 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › NMD3 0.74 65.0 5.63e-01 98.6% 82.7%
3219090 243.1.1.47 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF5390 0.72 65.0 5.41e-01 100.0% 87.8%
3854465 283.2.1.8 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › PF29994 0.71 63.0 5.33e-01 100.0% 70.8%
3254046 243.1.1.9 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF1348 0.71 62.0 4.92e-01 100.0% 71.4%
3976185 243.1.1.55 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TraE 0.71 58.0 4.59e-01 90.3% 70.0%
3450141 283.2.1.8 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › PF29994 0.70 62.0 5.59e-01 100.0% 86.0%
3236685 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.70 61.0 5.26e-01 97.2% 94.8%
4927976 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.70 60.0 5.04e-01 97.2% 91.2%
1866738 298.1.1.3 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Inos-1-P_synth 0.69 53.0 4.65e-01 81.9% 99.1%
3483288 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 59.0 4.93e-01 100.0% 65.4%
3168414 4099.1.1.46 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF30283 0.67 48.0 4.03e-01 76.4% 48.0%
3950757 243.1.1.7 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MecA_N 0.67 58.0 5.00e-01 97.2% 78.3%
3183677 523.1.1.3 a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › PF29994 0.67 59.0 5.15e-01 100.0% 72.7%
3694763 375.1.1.222 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF29994 0.67 59.0 4.88e-01 100.0% 63.8%
3168413 2.1.1.329 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29994 0.67 58.0 5.11e-01 100.0% 76.4%
5055184 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.67 56.0 5.31e-01 93.1% 80.0%
4030677 1116.1.1.0 a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain 0.66 52.0 4.14e-01 86.1% 70.7%
3764790 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.66 50.0 4.59e-01 81.9% 83.2%
4943626 330.2.1.0 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.66 57.0 4.83e-01 97.2% 61.7%
4413972 5.1.7.2 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › Sortilin-Vps10 0.66 56.0 3.33e-01 94.4% 15.0%
3970764 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.65 53.0 4.12e-01 90.3% 76.4%
4177430 7520.1.1.1 a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like › CinA 0.65 50.0 3.96e-01 83.3% 73.3%
5055812 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 57.0 4.99e-01 95.8% 85.7%
4000950 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.65 51.0 3.52e-01 86.1% 26.5%
5004589 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.65 56.0 4.88e-01 97.2% 89.1%
4024473 243.3.1.20 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › AKAP28 0.65 52.0 4.44e-01 88.9% 55.0%
3818341 331.9.1.4 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Coatomer_g_Cpla 0.64 45.0 4.41e-01 76.4% 67.9%
5009342 298.1.1.3 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Inos-1-P_synth 0.64 54.0 4.83e-01 95.8% 71.4%
4944127 298.1.1.0 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.64 54.0 4.77e-01 95.8% 69.1%
4946353 298.1.1.0 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.64 54.0 4.76e-01 95.8% 69.1%
5038819 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.63 54.0 3.71e-01 100.0% 27.4%
3177561 5.1.7.2 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › Sortilin-Vps10 0.63 54.0 2.99e-01 94.4% 7.2%
3281821 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.63 53.0 4.49e-01 97.2% 84.6%
3241736 9.1.1.48 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_10 0.63 49.0 3.67e-01 84.7% 35.4%
3989865 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.63 54.0 3.74e-01 100.0% 28.0%
9395 2003.1.5.151 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 0.62 49.0 3.38e-01 86.1% 25.0%
4262043 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.62 53.0 5.14e-01 97.2% 87.5%
3882099 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.62 53.0 4.59e-01 97.2% 97.4%
3951817 298.1.1.3 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Inos-1-P_synth 0.62 52.0 4.55e-01 94.4% 70.9%
3379145 11.1.5.29 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Sec23_BS 0.62 54.0 4.32e-01 100.0% 85.3%
6400 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.62 50.0 4.32e-01 91.7% 87.3%
2772183 1116.1.1.1 a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin_dom 0.61 50.0 3.51e-01 88.9% 68.4%
3264317 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.61 54.0 4.40e-01 98.6% 91.9%
167906 4321.1.1.2 a+b two layers › Peptidoglycan deacetylase N-terminal noncatalytic region › Peptidoglycan deacetylase N-terminal noncatalytic region › Peptidoglycan deacetylase N-terminal noncatalytic region › DUF3298,PdaC 0.61 51.0 3.75e-01 97.2% 55.0%
3591072 4321.1.1.1 a+b two layers › Peptidoglycan deacetylase N-terminal noncatalytic region › Peptidoglycan deacetylase N-terminal noncatalytic region › Peptidoglycan deacetylase N-terminal noncatalytic region › DUF3298 0.61 52.0 3.79e-01 100.0% 51.6%
1562270 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.61 49.0 4.21e-01 93.1% 82.3%
3398140 4.1.1.326 beta barrels › SH3 › SH3 › SH3 › Chitin_bind_4 0.61 47.0 4.65e-01 86.1% 80.0%
3892770 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 48.0 4.21e-01 87.5% 87.3%
5048040 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.60 52.0 4.14e-01 98.6% 82.7%
3644563 5.1.4.37 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.60 51.0 3.07e-01 98.6% 14.6%
3828737 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.60 50.0 4.27e-01 94.4% 86.7%
3698492 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.59 42.0 3.60e-01 87.5% 44.0%
3469398 11.1.5.29 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Sec23_BS 0.59 52.0 4.01e-01 100.0% 84.7%
3484042 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.59 52.0 3.99e-01 100.0% 87.1%
3257637 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.58 51.0 3.71e-01 100.0% 76.7%
3401172 1116.1.1.1 a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin_dom 0.58 47.0 3.34e-01 88.9% 70.2%
4017019 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.57 48.0 3.53e-01 91.7% 42.1%
4036788 222.1.1.12 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.55 48.0 3.62e-01 98.6% 43.9%
3597507 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.54 47.0 3.91e-01 95.8% 100.0%
5064859 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.54 48.0 3.35e-01 98.6% 40.0%
3734989 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.54 45.0 3.16e-01 94.4% 72.4%
3567909 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 43.0 3.92e-01 91.7% 89.0%
3609908 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.53 39.0 3.45e-01 80.6% 60.0%
4020185 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.53 41.0 3.56e-01 88.9% 87.5%
5037934 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 45.0 2.97e-01 100.0% 60.9%
3782284 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 40.0 2.97e-01 87.5% 53.3%
5041079 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 44.0 3.73e-01 98.6% 79.2%
3266828 2.1.1.4 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.51 37.0 3.18e-01 77.8% 54.8%