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js4906-25-2-S21_Prophage_curated_prodigal-single.1__X__X__00166

Bact-Vir

js4906-25-2-S21_Prophage_curated_prodigal-single.1__X__X__00166

Identity

Kingdom:
phage

Quality

53.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1165-1253
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF25788.3 best Ig_Rha78A_N 23.7 6.70e-05 97.8% 61.9%
PF00041.28 fn3 34.9 2.00e-08 94.4% 82.1%
D2 medium residues 153-264
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01841.26 best Transglut_core 34.1 4.00e-08 83.0% 76.8%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3isrA01 3.10.620.30 Alpha Beta › Roll › C8orf32 fold › 0.83 73.0 6.04e-01 92.9% 76.2%
3kd4A02 3.10.620.30 Alpha Beta › Roll › C8orf32 fold › 0.81 71.0 6.14e-01 91.1% 73.1%
4fgoA00 3.10.620.30 Alpha Beta › Roll › C8orf32 fold › 0.81 73.0 6.13e-01 96.4% 71.8%
2qsfA01 3.90.260.10 Alpha Beta › Alpha-Beta Complex › Coagulation Factor XIII; Chain A, domain 2 › Transglutaminase-like 0.72 64.0 4.63e-01 96.4% 55.9%
3n8hA02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.68 38.0 4.47e-01 75.9% 80.3%
4fh3A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.61 44.0 4.30e-01 75.0% 80.0%
1p0zA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 38.0 3.63e-01 85.7% 52.7%
1kaxA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.59 29.0 3.87e-01 75.9% 92.7%
3oajA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 34.0 3.14e-01 70.5% 48.6%
2pokA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.54 42.0 3.14e-01 83.0% 38.9%
2lrrA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.54 32.0 4.00e-01 78.6% 94.3%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 23.0 2.97e-01 75.9% 67.7%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 38.0 3.04e-01 76.8% 96.7%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 37.0 2.92e-01 76.8% 96.1%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5022714 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.87 68.0 6.22e-01 80.4% 77.9%
3967895 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.87 78.0 6.15e-01 93.8% 66.7%
3693551 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.87 79.0 6.19e-01 94.6% 71.0%
3856072 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.87 79.0 6.15e-01 94.6% 66.0%
4953249 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.87 78.0 6.84e-01 93.8% 72.9%
4012913 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.86 79.0 6.31e-01 95.5% 74.5%
5064712 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.86 77.0 6.49e-01 93.8% 68.0%
3952751 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.86 77.0 6.30e-01 93.8% 66.8%
3269109 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.86 79.0 6.38e-01 96.4% 66.7%
5059308 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.86 77.0 5.78e-01 93.8% 49.8%
5067811 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.86 77.0 6.26e-01 93.8% 71.6%
3721511 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.86 78.0 6.02e-01 95.5% 66.2%
5022074 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.86 76.0 6.13e-01 93.8% 69.0%
4980439 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.85 76.0 6.22e-01 93.8% 62.1%
4979181 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.85 76.0 6.26e-01 93.8% 67.0%
5079504 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.85 75.0 6.57e-01 93.8% 74.4%
5066088 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.84 76.0 6.73e-01 93.8% 78.7%
5069875 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.84 75.0 5.57e-01 93.8% 43.9%
5034224 219.1.1.76 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 0.84 74.0 6.31e-01 92.9% 76.0%
4977424 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.84 75.0 6.50e-01 93.8% 70.0%
5008694 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.83 77.0 6.39e-01 100.0% 82.1%
5062328 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.83 73.0 5.33e-01 93.8% 47.0%
5043547 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.83 74.0 6.50e-01 93.8% 77.4%
4955468 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.83 73.0 6.04e-01 93.8% 67.7%
3600835 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.83 76.0 6.25e-01 95.5% 73.8%
5061404 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.83 78.0 5.52e-01 100.0% 41.6%
3719109 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.83 76.0 6.16e-01 95.5% 70.5%
4989442 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.82 77.0 6.37e-01 99.1% 81.5%
5055063 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.82 75.0 6.12e-01 97.3% 70.3%
1563564 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.82 77.0 6.14e-01 100.0% 69.4%
4676513 219.1.1.76 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 0.82 75.0 6.27e-01 96.4% 68.9%
1323187 219.1.1.38 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C93 0.82 77.0 6.41e-01 100.0% 75.1%
3281165 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.81 72.0 6.50e-01 92.9% 76.6%
3786534 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.81 71.0 5.98e-01 92.9% 76.7%
4951834 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.81 76.0 6.04e-01 100.0% 87.6%
5067408 219.1.1.97 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CEPT76_peptidase 0.81 72.0 5.98e-01 93.8% 57.6%
5023597 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.81 73.0 6.33e-01 94.6% 91.3%
4960365 219.1.1.76 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 0.81 76.0 6.24e-01 100.0% 90.5%
4955823 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.81 76.0 5.70e-01 100.0% 88.8%
5033329 219.1.1.76 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 0.81 75.0 6.34e-01 99.1% 85.7%
5060170 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.81 75.0 5.30e-01 100.0% 43.2%
4989205 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.81 72.0 5.99e-01 93.8% 63.9%
4952203 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.80 75.0 5.76e-01 100.0% 90.2%
4951033 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.80 75.0 5.64e-01 99.1% 69.4%
4020641 219.1.1.79 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core2 0.80 72.0 6.09e-01 97.3% 75.6%
3193184 219.1.1.79 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core2 0.80 74.0 5.17e-01 100.0% 42.1%
4987387 219.1.1.76 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 0.80 75.0 6.16e-01 100.0% 90.0%
5033159 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.80 74.0 5.38e-01 99.1% 51.1%
4634055 219.1.1.76 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 0.80 73.0 5.96e-01 96.4% 67.9%
5003022 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.80 75.0 5.59e-01 100.0% 60.4%
4568123 219.1.1.79 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core2 0.79 73.0 6.23e-01 100.0% 68.0%
4951893 219.1.1.76 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 0.79 74.0 5.73e-01 100.0% 64.3%
3917547 219.1.1.79 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core2 0.79 73.0 5.11e-01 100.0% 43.6%
3685551 219.1.1.79 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core2 0.79 73.0 5.94e-01 100.0% 71.5%
4192402 219.1.1.79 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core2 0.78 72.0 6.28e-01 100.0% 71.5%
3852300 219.1.1.79 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core2 0.78 72.0 5.77e-01 100.0% 70.0%
4973593 219.1.1.76 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 0.78 62.0 5.59e-01 87.5% 63.4%
3604406 219.1.1.76 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 0.78 71.0 6.07e-01 96.4% 65.9%
5030377 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.78 69.0 6.55e-01 93.8% 90.8%
5021112 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.78 73.0 5.99e-01 100.0% 79.5%
4217957 219.1.1.79 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core2 0.78 71.0 6.21e-01 100.0% 71.5%
4952074 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.78 69.0 6.21e-01 95.5% 84.0%
3163931 219.1.1.79 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core2 0.77 72.0 6.37e-01 100.0% 76.1%
3639695 219.1.1.79 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core2 0.77 71.0 5.45e-01 100.0% 49.0%
4928444 219.1.1.79 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core2 0.76 69.0 5.94e-01 100.0% 70.7%
3816635 219.1.1.79 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core2 0.76 67.0 6.09e-01 97.3% 86.0%
3968923 219.1.1.79 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core2 0.75 69.0 6.10e-01 100.0% 72.5%
4986672 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.75 61.0 5.16e-01 89.3% 54.3%
3614523 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.75 68.0 5.44e-01 100.0% 55.9%
3707415 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.74 67.0 5.41e-01 100.0% 58.1%
3688914 283.1.1.4 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › ThrE 0.63 41.0 3.82e-01 77.7% 52.1%
4081797 3860.1.1.158 alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › ThrE 0.60 39.0 3.60e-01 75.9% 50.3%
3952545 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.54 37.0 4.34e-01 75.9% 100.0%
5004521 4317.1.1.0 a+b duplicates or obligate multimers › YdfO-like › YdfO-like › YdfO-like 0.52 29.0 3.68e-01 88.4% 100.0%
3967950 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.51 20.0 2.93e-01 77.7% 80.0%
3356481 386.1.1.117 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 0.51 34.0 3.80e-01 86.6% 92.8%
3403298 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 35.0 3.28e-01 87.5% 55.2%
D3 medium residues 265-353
PDB
D4 medium residues 572-597_620-714_733-754
PDB
D5 medium residues 887-1000
PDB
Domain cluster: representative
D6 medium residues 1007-1041
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zvnA01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.59 49.0 3.68e-01 100.0% 61.7%
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.56 44.0 4.26e-01 100.0% 79.5%
3lrrA00 2.170.150.30 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › RIG-I-like receptor, C-terminal regulatory domain 0.56 42.0 2.96e-01 88.6% 28.1%
3dasA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.56 42.0 2.49e-01 100.0% 9.3%
3lyyA00 2.60.40.4300 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 42.0 3.26e-01 97.1% 55.9%
2uxwA03 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.55 42.0 3.06e-01 91.4% 58.3%
1jqpA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 40.0 2.55e-01 91.4% 64.9%
1gpqB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.54 41.0 3.00e-01 100.0% 71.9%
3pnrB00 2.60.40.2020 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 37.0 2.89e-01 100.0% 66.7%
3hfqA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 36.0 2.25e-01 100.0% 10.9%
4perB00 3.10.130.10 Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain 0.51 39.0 3.00e-01 100.0% 48.6%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 36.0 2.77e-01 100.0% 48.7%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4466445 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.59 45.0 3.02e-01 85.7% 22.6%
4000227 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 40.0 3.25e-01 100.0% 85.3%
2512922 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 39.0 3.23e-01 94.3% 42.9%
4120121 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.51 37.0 2.89e-01 100.0% 75.5%
3496040 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.50 38.0 2.63e-01 97.1% 40.0%
3449382 3256.1.1.2 a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain › eIF3g 0.50 36.0 3.67e-01 97.1% 97.1%