←Back to structures
js4906-25-2-S21_Prophage_curated_prodigal-single.1__X__X__00169
Bact-Virjs4906-25-2-S21_Prophage_curated_prodigal-single.1__X__X__00169
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-64_120-181
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4chgA00 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.75 | 61.0 | 6.00e-01 | 85.7% | 99.2% |
| 1w8iA00 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.74 | 60.0 | 5.60e-01 | 85.7% | 84.4% |
| 2vqmA00 | 3.40.800.20 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain | 0.58 | 47.0 | 3.36e-01 | 88.1% | 81.6% |
| 4wnyA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.58 | 49.0 | 4.86e-01 | 91.3% | 98.5% |
| 3gygC01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.57 | 46.0 | 4.02e-01 | 88.1% | 74.1% |
| 1s2oA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.56 | 46.0 | 4.16e-01 | 88.1% | 75.7% |
| 1im5A00 | 3.40.50.850 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like | 0.56 | 46.0 | 4.07e-01 | 88.1% | 100.0% |
| 2a67B00 | 3.40.50.850 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like | 0.55 | 46.0 | 4.19e-01 | 89.7% | 81.4% |
| 2a1fC00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.55 | 47.0 | 3.82e-01 | 92.9% | 87.8% |
| 3o90B00 | 3.40.50.850 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like | 0.55 | 44.0 | 3.91e-01 | 87.3% | 83.6% |
| 4h17A00 | 3.40.50.850 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like | 0.54 | 49.0 | 4.24e-01 | 100.0% | 71.6% |
| 2jieA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.54 | 47.0 | 3.28e-01 | 96.8% | 89.7% |
| 5hsgA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.54 | 41.0 | 4.18e-01 | 87.3% | 80.8% |
| 3ewiB00 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.54 | 44.0 | 4.14e-01 | 88.9% | 84.8% |
| 3mcwA00 | 3.40.50.850 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like | 0.54 | 46.0 | 3.99e-01 | 93.7% | 72.3% |
| 4jgbB00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 44.0 | 3.71e-01 | 88.1% | 71.2% |
| 1kamA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.53 | 44.0 | 3.87e-01 | 88.1% | 68.3% |
| 1nf2A01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.53 | 43.0 | 4.02e-01 | 89.7% | 77.6% |
| 6i3mE02 | 3.40.50.10470 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Translation initiation factor eif-2b; domain 2 | 0.51 | 44.0 | 3.85e-01 | 96.8% | 91.0% |
| 4bubA02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.51 | 44.0 | 3.65e-01 | 95.2% | 83.0% |
| 1e5nA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 44.0 | 3.24e-01 | 96.0% | 90.5% |
| 3milB00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.51 | 41.0 | 3.38e-01 | 88.1% | 82.8% |
| 7dsmA01 | 3.40.1030.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain | 0.51 | 42.0 | 3.31e-01 | 88.9% | 59.2% |
| 6ia6A01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.51 | 36.0 | 2.87e-01 | 73.8% | 87.9% |
| 4k2hD00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.51 | 41.0 | 3.66e-01 | 88.9% | 81.7% |
| 3hb7A00 | 3.40.50.850 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like | 0.51 | 45.0 | 3.98e-01 | 99.2% | 83.0% |
| 3ot4A00 | 3.40.50.850 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like | 0.50 | 46.0 | 3.93e-01 | 100.0% | 79.3% |
| 4hu4A00 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.50 | 39.0 | 3.14e-01 | 82.5% | 78.1% |
ECOD (78)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5051491 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.81 | 66.0 | 6.50e-01 | 85.7% | 99.3% |
| 5028587 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.81 | 68.0 | 6.59e-01 | 88.9% | 97.9% |
| 5008486 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.80 | 66.0 | 6.47e-01 | 86.5% | 97.8% |
| 5049964 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.79 | 65.0 | 6.41e-01 | 86.5% | 100.0% |
| 4993076 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.79 | 65.0 | 6.46e-01 | 85.7% | 100.0% |
| 4987983 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.79 | 65.0 | 6.28e-01 | 86.5% | 97.8% |
| 5032530 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.78 | 64.0 | 6.22e-01 | 86.5% | 100.0% |
| 5040944 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.78 | 65.0 | 6.39e-01 | 88.1% | 100.0% |
| 4967672 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.78 | 63.0 | 6.10e-01 | 85.7% | 100.0% |
| 4993117 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.77 | 63.0 | 6.09e-01 | 85.7% | 100.0% |
| 4967517 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.77 | 63.0 | 6.25e-01 | 84.9% | 100.0% |
| 4966337 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.77 | 63.0 | 6.21e-01 | 85.7% | 99.2% |
| 4967852 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.77 | 64.0 | 6.30e-01 | 88.1% | 99.3% |
| 5013146 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.77 | 64.0 | 5.97e-01 | 86.5% | 100.0% |
| 4969656 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.77 | 63.0 | 6.24e-01 | 84.9% | 98.4% |
| 5077890 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.77 | 62.0 | 6.16e-01 | 84.1% | 100.0% |
| 4966250 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.77 | 63.0 | 6.07e-01 | 86.5% | 95.0% |
| 5032220 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.76 | 64.0 | 6.29e-01 | 88.9% | 99.3% |
| 5031107 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.76 | 63.0 | 6.13e-01 | 86.5% | 100.0% |
| 4984740 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.76 | 63.0 | 6.06e-01 | 86.5% | 98.6% |
| 5031993 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.76 | 64.0 | 6.22e-01 | 88.9% | 95.7% |
| 5074995 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.76 | 63.0 | 6.09e-01 | 86.5% | 97.8% |
| 4967555 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.76 | 61.0 | 6.00e-01 | 84.9% | 97.8% |
| 5078327 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.76 | 64.0 | 6.29e-01 | 88.1% | 100.0% |
| 4966264 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.75 | 63.0 | 6.20e-01 | 88.1% | 98.5% |
| 4992869 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.75 | 60.0 | 5.94e-01 | 84.1% | 97.0% |
| 4966469 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.75 | 64.0 | 6.26e-01 | 90.5% | 97.8% |
| 4987010 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.75 | 62.0 | 6.16e-01 | 85.7% | 100.0% |
| 5079011 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.75 | 63.0 | 5.76e-01 | 88.1% | 94.4% |
| 3603453 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.75 | 64.0 | 6.02e-01 | 89.7% | 98.0% |
| 3953611 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.75 | 61.0 | 5.91e-01 | 85.7% | 100.0% |
| 5059447 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.75 | 62.0 | 5.94e-01 | 86.5% | 97.1% |
| 3953710 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.75 | 61.0 | 5.89e-01 | 85.7% | 100.0% |
| 5014214 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.75 | 63.0 | 5.84e-01 | 88.9% | 98.7% |
| 5053452 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.75 | 61.0 | 6.01e-01 | 86.5% | 100.0% |
| 4955518 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.75 | 61.0 | 5.98e-01 | 86.5% | 98.5% |
| 4950301 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.75 | 66.0 | 5.99e-01 | 92.9% | 98.8% |
| 4992454 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.74 | 61.0 | 5.95e-01 | 85.7% | 99.3% |
| 4951083 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.74 | 61.0 | 6.07e-01 | 85.7% | 100.0% |
| 4975539 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.74 | 65.0 | 5.88e-01 | 92.9% | 100.0% |
| 5062600 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.74 | 65.0 | 6.28e-01 | 92.9% | 97.9% |
| 5050889 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.74 | 62.0 | 6.18e-01 | 88.1% | 100.0% |
| 5078800 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.74 | 60.0 | 5.64e-01 | 84.9% | 89.3% |
| 4992805 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.74 | 61.0 | 5.79e-01 | 86.5% | 94.5% |
| 4934852 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.73 | 61.0 | 6.09e-01 | 88.1% | 100.0% |
| 5077686 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.73 | 60.0 | 5.69e-01 | 86.5% | 95.2% |
| 4966307 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.73 | 60.0 | 6.03e-01 | 85.7% | 100.0% |
| 5008164 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.72 | 60.0 | 5.61e-01 | 87.3% | 100.0% |
| 4966357 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.71 | 59.0 | 5.65e-01 | 88.1% | 95.2% |
| 5052879 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.69 | 56.0 | 5.19e-01 | 85.7% | 93.8% |
| 4937984 | 2006.1.4.50 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF3368 | 0.68 | 55.0 | 5.28e-01 | 85.7% | 82.8% |
| 4943787 | 2006.1.4.8 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_5 | 0.66 | 55.0 | 4.77e-01 | 89.7% | 93.7% |
| 4967880 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.63 | 57.0 | 5.75e-01 | 97.6% | 100.0% |
| 3721945 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.59 | 53.0 | 4.68e-01 | 98.4% | 79.5% |
| 3176999 | 2006.1.4.25 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_I | 0.59 | 53.0 | 4.28e-01 | 98.4% | 76.6% |
| 3182237 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.59 | 53.0 | 4.51e-01 | 98.4% | 72.0% |
| 4994080 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.57 | 50.0 | 4.86e-01 | 96.8% | 94.3% |
| 4365265 | 7512.1.1.31 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_4_4 | 0.56 | 47.0 | 3.81e-01 | 91.3% | 56.0% |
| 3586831 | 7561.1.1.1 ↗ | a/b three-layered sandwiches › Isochorismatase-like hydrolases › Isochorismatase-like hydrolases › Isochorismatase-like hydrolases › Isochorismatase | 0.56 | 47.0 | 4.33e-01 | 92.1% | 81.5% |
| 3484303 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.56 | 51.0 | 4.42e-01 | 100.0% | 83.2% |
| 3194165 | 2003.1.5.99 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › SRR1 | 0.56 | 48.0 | 3.55e-01 | 96.0% | 55.1% |
| 3980095 | 2003.2.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Molybdopterin | 0.55 | 48.0 | 4.02e-01 | 97.6% | 88.7% |
| 1686588 | 2003.2.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Molybdopterin | 0.55 | 48.0 | 3.92e-01 | 97.6% | 80.1% |
| 3952368 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.55 | 48.0 | 4.82e-01 | 96.8% | 96.9% |
| 4141898 | 7561.1.1.1 ↗ | a/b three-layered sandwiches › Isochorismatase-like hydrolases › Isochorismatase-like hydrolases › Isochorismatase-like hydrolases › Isochorismatase | 0.55 | 45.0 | 3.98e-01 | 88.9% | 73.5% |
| 3314184 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.54 | 35.0 | 3.90e-01 | 92.1% | 83.0% |
| 3300451 | 2006.1.1.52 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › PF28688 | 0.54 | 45.0 | 4.20e-01 | 89.7% | 87.7% |
| 4075399 | 7512.1.1.31 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_4_4 | 0.54 | 44.0 | 3.65e-01 | 89.7% | 75.1% |
| 139670 | 7561.1.1.1 ↗ | a/b three-layered sandwiches › Isochorismatase-like hydrolases › Isochorismatase-like hydrolases › Isochorismatase-like hydrolases › Isochorismatase | 0.54 | 46.0 | 3.99e-01 | 93.7% | 72.3% |
| 5030811 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.53 | 43.0 | 4.46e-01 | 88.1% | 94.8% |
| 5053929 | 7512.1.1.24 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_5 | 0.53 | 43.0 | 3.50e-01 | 88.1% | 91.3% |
| 5031436 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.52 | 35.0 | 4.11e-01 | 81.0% | 100.0% |
| 4992512 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.51 | 45.0 | 4.44e-01 | 99.2% | 99.3% |
| 4453606 | 2006.1.5.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Arginase/deacetylase › Arginase | 0.51 | 45.0 | 3.46e-01 | 100.0% | 76.8% |
| 4967531 | 2003.1.5.41 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › RMNT_CmcI | 0.51 | 45.0 | 3.63e-01 | 97.6% | 66.0% |
| 5009796 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.51 | 38.0 | 4.18e-01 | 81.7% | 100.0% |
| 5000049 | 2004.1.1.196 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 | 0.51 | 44.0 | 3.80e-01 | 96.8% | 81.0% |
| 4352767 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.50 | 44.0 | 3.12e-01 | 96.8% | 73.2% |
D2
medium
residues 65-119
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3pmiA02 | 6.10.300.20 | Special › Helix non-globular › cAMP-dependent Protein Kinase, Chain A › | 0.74 | 60.0 | 6.34e-01 | 100.0% | 100.0% |
| 2w0gA00 | 1.20.58.610 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cdc37, Hsp90 binding domain | 0.72 | 61.0 | 4.72e-01 | 98.2% | 45.7% |
| 1zbsA03 | 1.10.720.160 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.67 | 56.0 | 4.87e-01 | 98.2% | 95.5% |
| 2x1dA02 | 1.10.10.2120 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.66 | 50.0 | 4.58e-01 | 83.6% | 73.0% |
| 2fzlA02 | 6.10.140.1180 | Special › Helix non-globular › Helix Hairpins › | 0.66 | 48.0 | 4.66e-01 | 78.2% | 80.6% |
| 2w02B01 | 1.10.150.640 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle | 0.65 | 55.0 | 5.09e-01 | 98.2% | 98.6% |
| 3d5lA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 42.0 | 4.38e-01 | 72.7% | 71.2% |
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 50.0 | 4.97e-01 | 85.5% | 84.5% |
| 7xpcA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 53.0 | 3.29e-01 | 94.5% | 16.8% |
| 3e3vA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 44.0 | 4.44e-01 | 80.0% | 73.2% |
| 1qo0D02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 44.0 | 4.78e-01 | 76.4% | 95.7% |
| 2oyyA00 | 6.10.80.10 | Special › Helix non-globular › DNA polymerase; domain 1 › Hexameric tyrosine-coordinated heme protein (HTHP) | 0.62 | 51.0 | 4.84e-01 | 100.0% | 87.3% |
| 2ktmA00 | 1.10.790.10 | Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain | 0.61 | 53.0 | 5.00e-01 | 100.0% | 85.3% |
| 5mmjo00 | 1.10.287.10 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding | 0.61 | 43.0 | 3.85e-01 | 85.5% | 54.7% |
| 2hh7A00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.59 | 46.0 | 3.97e-01 | 92.7% | 54.1% |
| 5dn6J00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.59 | 44.0 | 4.02e-01 | 100.0% | 59.5% |
| 1af7A01 | 1.10.155.10 | Mainly Alpha › Orthogonal Bundle › Chemotaxis Receptor Methyltransferase Cher; domain 1 › Chemotaxis receptor methyltransferase CheR, N-terminal domain | 0.59 | 42.0 | 3.85e-01 | 80.0% | 61.3% |
| 5b1aC01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 41.0 | 3.81e-01 | 92.7% | 58.8% |
| 5kbwB00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.58 | 49.0 | 3.54e-01 | 100.0% | 32.7% |
| 1skvA00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.58 | 40.0 | 3.82e-01 | 90.9% | 62.5% |
| 3eslA01 | 1.20.58.2070 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 41.0 | 3.71e-01 | 87.3% | 56.0% |
| 7y11B01 | 1.10.8.20 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p | 0.57 | 39.0 | 3.84e-01 | 74.5% | 65.1% |
| 4r3aA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 47.0 | 3.34e-01 | 96.4% | 96.0% |
| 2yevC00 | 6.10.280.110 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 44.0 | 4.26e-01 | 92.7% | 76.2% |
| 1tjlA00 | 1.20.120.910 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain | 0.54 | 45.0 | 3.26e-01 | 100.0% | 33.8% |
| 3lphC00 | 6.10.140.630 | Special › Helix non-globular › Helix Hairpins › | 0.54 | 46.0 | 4.57e-01 | 100.0% | 91.4% |
| 1lrzA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 43.0 | 4.19e-01 | 87.3% | 80.6% |
| 4oe8C00 | 1.10.8.1170 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.53 | 48.0 | 4.05e-01 | 98.2% | 72.4% |
| 3rq9A00 | 1.10.287.2500 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.53 | 44.0 | 3.82e-01 | 87.3% | 66.7% |
| 4cc9B00 | 1.20.5.4730 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.53 | 44.0 | 3.79e-01 | 100.0% | 79.6% |
| 1zpyA00 | 6.10.140.1960 | Special › Helix non-globular › Helix Hairpins › | 0.53 | 44.0 | 3.66e-01 | 96.4% | 53.8% |
| 3h6pC00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.53 | 45.0 | 4.57e-01 | 94.5% | 98.2% |
| 2mpkA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.52 | 43.0 | 3.97e-01 | 100.0% | 71.6% |
| 4zi3D00 | 1.20.1520.10 | Mainly Alpha › Up-down Bundle › Adp-ribosylation factor-like protein 2-binding protein fold › ADP-ribosylation factor-like 2-binding protein, domain | 0.51 | 42.0 | 3.38e-01 | 100.0% | 43.8% |
| 4e4eA01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.51 | 42.0 | 3.80e-01 | 87.3% | 69.0% |
| 4ioeA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.51 | 46.0 | 3.89e-01 | 98.2% | 64.4% |
| 3favD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.51 | 45.0 | 4.04e-01 | 100.0% | 70.5% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3588554 | 162.1.1.1 ↗ | alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD | 0.73 | 58.0 | 4.72e-01 | 96.4% | 46.7% |
| 3236179 | 708.1.2.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like | 0.72 | 46.0 | 3.32e-01 | 100.0% | 22.5% |
| 3594987 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.71 | 53.0 | 3.17e-01 | 80.0% | 11.0% |
| 4951492 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.67 | 45.0 | 4.27e-01 | 100.0% | 58.5% |
| 3404237 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.65 | 58.0 | 5.10e-01 | 100.0% | 68.8% |
| 3306664 | 103.1.1.3 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › CRAL_TRIO_N | 0.63 | 44.0 | 3.92e-01 | 89.1% | 51.2% |
| 5013255 | 518.1.1.1 ↗ | alpha arrays › Chemotaxis receptor methyltransferase CheR, N-terminal domain › Chemotaxis receptor methyltransferase CheR, N-terminal domain › Chemotaxis receptor methyltransferase CheR, N-terminal domain › CheR_N | 0.61 | 47.0 | 4.43e-01 | 87.3% | 71.4% |
| 3589789 | 5042.1.1.1 ↗ | extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › CorA | 0.60 | 52.0 | 5.11e-01 | 98.2% | 98.3% |
| 4946421 | 2004.1.1.120 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII | 0.60 | 51.0 | 2.89e-01 | 96.4% | 18.0% |
| 3973994 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.60 | 46.0 | 4.17e-01 | 92.7% | 61.3% |
| 3273491 | 2004.1.1.184 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 | 0.59 | 46.0 | 2.81e-01 | 83.6% | 95.3% |
| 3598977 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.58 | 50.0 | 4.39e-01 | 100.0% | 65.9% |
| 3246572 | 3470.1.1.29 ↗ | extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › COPIIcoated_ERV | 0.57 | 48.0 | 4.54e-01 | 100.0% | 80.0% |
| 5009433 | 5042.1.1.1 ↗ | extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › CorA | 0.56 | 48.0 | 4.61e-01 | 100.0% | 83.1% |
| 3569033 | 3538.1.1.8 ↗ | extended segments › MerF › MerF › MerF › PF28754 | 0.54 | 49.0 | 4.90e-01 | 98.2% | 98.2% |
| 3732909 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.54 | 46.0 | 3.99e-01 | 92.7% | 62.5% |
| 3464325 | 611.9.1.4 ↗ | alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N | 0.54 | 46.0 | 3.92e-01 | 92.7% | 84.7% |
| 3617091 | 622.1.1.17 ↗ | alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › PF29509 | 0.53 | 45.0 | 3.92e-01 | 90.9% | 62.5% |
| 4941252 | 5041.1.1.0 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C | 0.52 | 43.0 | 4.12e-01 | 92.7% | 83.1% |
| 4361 | 605.7.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › FHV B2 protein-like › FHV B2 protein-like › B2 | 0.52 | 47.0 | 4.32e-01 | 100.0% | 80.0% |
| 3952753 | 150.7.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PE › PE › PE | 0.52 | 43.0 | 3.92e-01 | 92.7% | 70.7% |
| 5046057 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.50 | 43.0 | 4.09e-01 | 94.5% | 80.0% |