←Back to structures
js4906-25-2-S21_Prophage_curated_prodigal-single.1__X__X__00171
Bact-Virjs4906-25-2-S21_Prophage_curated_prodigal-single.1__X__X__00171
Identity
- Kingdom:
- phage
Quality
66.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 861-949
Domain cluster:
rep: MT234670.1__QIW88495.1__X__00062__D259-340
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00041.28 best | fn3 | 33.9 | 4.00e-08 | 93.3% | 81.0% |
D2
medium
residues 78-145
D3
medium
residues 209-309_430-452
D4
medium
residues 325-429
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1jw3A00 | 3.55.10.10 | Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain | 0.69 | 40.0 | 3.66e-01 | 81.0% | 43.6% |
| 3on9A00 | 2.60.240.20 | Mainly Beta › Sandwich › Viral Chemokine Inhibitor; Chain A › | 0.63 | 54.0 | 4.70e-01 | 94.3% | 75.6% |
| 7k0xA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 40.0 | 4.57e-01 | 90.5% | 88.5% |
| 1zpvA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.62 | 43.0 | 4.73e-01 | 93.3% | 89.4% |
| 4r8oA00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.62 | 37.0 | 3.84e-01 | 75.2% | 64.3% |
| 5is2A01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.60 | 42.0 | 4.50e-01 | 92.4% | 83.5% |
| 3mswA00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.59 | 37.0 | 3.38e-01 | 76.2% | 48.2% |
| 2ldkA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 49.0 | 4.10e-01 | 91.4% | 86.0% |
| 2bkyX00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.57 | 38.0 | 4.18e-01 | 84.8% | 83.7% |
| 6u6pA01 | 3.30.1070.10 | Alpha Beta › 2-Layer Sandwich › Cell Cycle; Chain A › Cell division topological specificity factor MinE | 0.56 | 34.0 | 3.83e-01 | 75.2% | 80.8% |
| 3wirA01 | 2.70.98.40 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain | 0.55 | 48.0 | 3.66e-01 | 97.1% | 44.7% |
| 6c98A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 37.0 | 3.98e-01 | 92.4% | 81.3% |
| 3o4oB03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 44.0 | 4.41e-01 | 97.1% | 85.3% |
| 3f62A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 42.0 | 4.20e-01 | 90.5% | 81.5% |
| 3uebF00 | 3.30.300.100 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like | 0.53 | 43.0 | 4.42e-01 | 90.5% | 91.0% |
| 3omlA03 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.53 | 37.0 | 2.83e-01 | 72.4% | 96.9% |
| 3gwmA00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.52 | 38.0 | 3.56e-01 | 76.2% | 100.0% |
| 4bxiA00 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.52 | 39.0 | 3.51e-01 | 79.0% | 93.2% |
| 2d4rA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 43.0 | 3.85e-01 | 89.5% | 94.5% |
| 2wdoA00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.52 | 37.0 | 3.56e-01 | 75.2% | 100.0% |
| 4nehA04 | 2.60.40.1510 | Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3 | 0.52 | 42.0 | 3.74e-01 | 100.0% | 60.4% |
| 3fbqA01 | 2.60.40.1630 | Mainly Beta › Sandwich › Immunoglobulin-like › bacillus anthracis domain | 0.52 | 45.0 | 4.06e-01 | 94.3% | 77.8% |
| 2mq8A00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.52 | 42.0 | 4.18e-01 | 92.4% | 83.0% |
| 1q2lA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.51 | 42.0 | 3.33e-01 | 91.4% | 71.9% |
| 1ao7B00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 39.0 | 4.00e-01 | 95.2% | 84.0% |
| 1vs3A02 | 3.30.70.660 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, C-terminal subdomain | 0.51 | 43.0 | 3.93e-01 | 93.3% | 93.1% |
| 3hr6A02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 46.0 | 4.04e-01 | 100.0% | 73.2% |
| 3duwA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 40.0 | 3.17e-01 | 83.8% | 47.0% |
| 6g47A00 | 2.60.90.10 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain | 0.51 | 40.0 | 3.52e-01 | 88.6% | 99.4% |
| 2oojA00 | 2.40.350.10 | Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like | 0.51 | 37.0 | 3.47e-01 | 76.2% | 100.0% |
| 1g84A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 40.0 | 4.02e-01 | 98.1% | 84.8% |
| 6d6tA01 | 2.70.170.10 | Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain | 0.51 | 43.0 | 3.48e-01 | 95.2% | 54.3% |
| 2ccvA00 | 2.60.40.2080 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 38.0 | 3.97e-01 | 94.3% | 87.9% |
| 1sesA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.50 | 45.0 | 3.15e-01 | 97.1% | 32.4% |
| 3bqwA01 | 3.15.30.10 | Alpha Beta › Super Roll › putative capsid protein of prophage fold › putative capsid protein of prophage domain like | 0.50 | 39.0 | 3.15e-01 | 83.8% | 71.9% |
| 2fggA01 | 3.30.160.240 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 | 0.50 | 30.0 | 3.41e-01 | 73.3% | 81.3% |
ECOD (56)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3164555 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.72 | 43.0 | 3.75e-01 | 78.1% | 41.3% |
| 4932472 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.65 | 47.0 | 4.96e-01 | 81.9% | 83.2% |
| 4513450 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.65 | 52.0 | 5.20e-01 | 88.6% | 84.8% |
| 3259285 | 12.3.1.19 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 | 0.65 | 58.0 | 4.10e-01 | 97.1% | 74.3% |
| 3425789 | 5.1.3.68 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 | 0.64 | 48.0 | 3.35e-01 | 78.1% | 25.3% |
| 4140248 | 5.1.4.577 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › YqgU | 0.63 | 43.0 | 3.03e-01 | 79.0% | 23.2% |
| 4682512 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.63 | 52.0 | 4.96e-01 | 90.5% | 76.0% |
| 4094675 | 812.1.1.1 ↗ | a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain › MinE | 0.62 | 39.0 | 4.24e-01 | 82.9% | 77.6% |
| 4927380 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.62 | 54.0 | 4.04e-01 | 96.2% | 44.6% |
| 3944288 | 319.3.1.1 ↗ | beta sandwiches › HSP20-like › B2 domain of PilQ › B2 domain of PilQ › AMIN | 0.62 | 50.0 | 4.88e-01 | 86.7% | 89.6% |
| 1349783 | 3347.1.1.1 ↗ | beta meanders › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › DUF3836 | 0.62 | 37.0 | 3.84e-01 | 75.2% | 64.3% |
| 3981007 | 319.3.1.0 ↗ | beta sandwiches › HSP20-like › B2 domain of PilQ › B2 domain of PilQ | 0.61 | 49.0 | 4.95e-01 | 84.8% | 96.2% |
| 4012095 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.61 | 53.0 | 4.99e-01 | 94.3% | 80.0% |
| 4673207 | 256.1.1.10 ↗ | a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › MinE | 0.61 | 38.0 | 4.17e-01 | 81.9% | 77.6% |
| 3985634 | 3313.1.1.1 ↗ | a+b two layers › Uncharacterized protein VC_A0919 › Uncharacterized protein VC_A0919 › Uncharacterized protein VC_A0919 › DUF406 | 0.61 | 46.0 | 4.74e-01 | 96.2% | 84.0% |
| 3718936 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.60 | 52.0 | 3.93e-01 | 96.2% | 85.4% |
| 3308135 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.60 | 43.0 | 4.57e-01 | 92.4% | 86.7% |
| 3527092 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.60 | 46.0 | 4.62e-01 | 97.1% | 81.0% |
| 4197086 | 12.3.1.24 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas | 0.60 | 51.0 | 3.71e-01 | 95.2% | 43.9% |
| 4153552 | 319.1.1.3 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS | 0.59 | 51.0 | 4.70e-01 | 94.3% | 75.6% |
| 3874965 | 11.1.1.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig | 0.59 | 45.0 | 4.60e-01 | 96.2% | 81.0% |
| 185414 | 3347.1.1.1 ↗ | beta meanders › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › DUF3836 | 0.59 | 37.0 | 3.39e-01 | 76.2% | 48.6% |
| 3898522 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 29.0 | 4.00e-01 | 82.9% | 98.0% |
| 3178364 | 319.1.1.19 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF29696 | 0.58 | 44.0 | 4.48e-01 | 81.0% | 96.2% |
| 3255497 | 12.3.1.46 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD | 0.58 | 50.0 | 3.97e-01 | 97.1% | 53.3% |
| 3759752 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.58 | 46.0 | 4.63e-01 | 96.2% | 83.8% |
| 4979070 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.57 | 46.0 | 4.70e-01 | 92.4% | 86.7% |
| 3497426 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 44.0 | 4.28e-01 | 99.0% | 74.8% |
| 3921959 | 11.1.1.363 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_3 | 0.57 | 41.0 | 4.27e-01 | 93.3% | 82.1% |
| 3914568 | 11.1.1.108 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 | 0.57 | 42.0 | 4.28e-01 | 95.2% | 78.1% |
| 2731314 | 11.1.1.96 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set | 0.57 | 38.0 | 4.07e-01 | 93.3% | 80.9% |
| 3507841 | 864.1.1.2 ↗ | a+b two layers › DLC › DLC › DLC › Tctex-1 | 0.56 | 35.0 | 3.34e-01 | 84.8% | 53.6% |
| 3892414 | 11.1.1.363 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_3 | 0.56 | 38.0 | 3.96e-01 | 91.4% | 74.0% |
| 3917225 | 11.1.1.96 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set | 0.55 | 38.0 | 3.73e-01 | 88.6% | 65.2% |
| 4172303 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.55 | 33.0 | 3.10e-01 | 74.3% | 49.6% |
| 3236190 | 314.1.1.6 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB | 0.55 | 49.0 | 3.87e-01 | 98.1% | 85.1% |
| 1565212 | 12.3.1.21 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hyd_65N_2 | 0.54 | 42.0 | 3.27e-01 | 82.9% | 89.8% |
| 3940993 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 37.0 | 3.80e-01 | 96.2% | 74.0% |
| 4215475 | 109.2.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid | 0.54 | 48.0 | 2.88e-01 | 98.1% | 17.7% |
| 3279524 | 331.3.1.9 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 | 0.54 | 45.0 | 4.01e-01 | 92.4% | 87.7% |
| 3889152 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.53 | 44.0 | 4.33e-01 | 97.1% | 82.6% |
| 3477921 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.53 | 47.0 | 4.18e-01 | 100.0% | 81.9% |
| 4877694 | 304.51.1.3 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_assoc | 0.53 | 45.0 | 4.38e-01 | 92.4% | 88.9% |
| 1144825 | 11.1.1.176 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF4179 | 0.52 | 45.0 | 4.06e-01 | 94.3% | 77.8% |
| 3842648 | 11.1.1.586 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CATSPERE_Ig-like | 0.51 | 45.0 | 4.16e-01 | 98.1% | 74.8% |
| 3172537 | 301.8.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › ACPS | 0.51 | 37.0 | 3.20e-01 | 76.2% | 97.0% |
| 3962932 | 301.8.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase | 0.51 | 37.0 | 3.49e-01 | 76.2% | 99.2% |
| 3289656 | 331.3.1.26 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF2867 | 0.51 | 42.0 | 3.78e-01 | 90.5% | 83.3% |
| 4033497 | 309.1.1.4 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C | 0.51 | 43.0 | 3.32e-01 | 92.4% | 75.7% |
| 4569091 | 11.1.1.88 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM9_1 | 0.51 | 44.0 | 3.75e-01 | 96.2% | 84.6% |
| 3323226 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.51 | 36.0 | 3.22e-01 | 72.4% | 80.7% |
| 4402682 | 59.1.1.9 ↗ | beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › EAF | 0.51 | 37.0 | 3.82e-01 | 86.7% | 81.0% |
| 874 | 9.13.1.3 ↗ | beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › DUF3224 | 0.51 | 37.0 | 3.46e-01 | 76.2% | 100.0% |
| 3387950 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 39.0 | 3.80e-01 | 95.2% | 75.7% |
| 3714612 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.50 | 35.0 | 3.13e-01 | 73.3% | 75.2% |
| 3282852 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.50 | 42.0 | 3.71e-01 | 91.4% | 79.4% |