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js4906-25-2-S21_Prophage_curated_prodigal-single.1__X__X__00180
Bact-Virjs4906-25-2-S21_Prophage_curated_prodigal-single.1__X__X__00180
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 4-73
Domain cluster:
rep: KY629621.2__AQY55355.1__MS1_36__00036__D5-55
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3pg4A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.57 | 45.0 | 3.25e-01 | 90.0% | 63.5% |
| 2r6uA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.55 | 46.0 | 3.87e-01 | 94.3% | 100.0% |
| 1ymmE01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 37.0 | 3.20e-01 | 71.4% | 97.4% |
| 7solA02 | 3.10.290.60 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › Ubiquitin-activating enzyme E1, UFD domain | 0.55 | 38.0 | 3.48e-01 | 75.7% | 91.3% |
| 1jv2B04 | 4.10.1240.30 | Few Secondary Structures › Irregular › Hormone receptor fold › | 0.52 | 44.0 | 4.22e-01 | 100.0% | 81.4% |
| 1hxmA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 34.0 | 2.97e-01 | 70.0% | 92.6% |
| 4hz9B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 38.0 | 3.28e-01 | 84.3% | 85.4% |
| 1qhdA01 | 2.60.120.170 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 42.0 | 3.31e-01 | 98.6% | 92.4% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3611306 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.59 | 41.0 | 2.98e-01 | 74.3% | 37.1% |
| 3930540 | 11.1.1.848 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7585 | 0.59 | 42.0 | 4.00e-01 | 77.1% | 98.8% |
| 4862298 | 230.6.1.1 ↗ | a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain › Ribosomal_S3Ae | 0.55 | 41.0 | 3.69e-01 | 78.6% | 76.8% |
| 3204996 | 5.1.3.149 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_2, Kelch_KLHDC2_KLHL20_DRC7 | 0.54 | 46.0 | 2.90e-01 | 100.0% | 92.4% |
| 3177726 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.54 | 42.0 | 3.29e-01 | 92.9% | 53.0% |
| 5055003 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 36.0 | 3.26e-01 | 71.4% | 92.3% |
| 3472609 | 220.1.1.35 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › IQ_SEC7_PH | 0.51 | 42.0 | 3.28e-01 | 92.9% | 55.8% |
D2
medium
residues 74-133
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2e5vA03 | 1.20.58.100 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain | 0.74 | 55.0 | 4.64e-01 | 78.3% | 56.7% |
| 2hjmA01 | 1.20.120.460 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › protein pf1176 like | 0.73 | 52.0 | 4.61e-01 | 75.0% | 98.8% |
| 1ax8A00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.70 | 59.0 | 4.60e-01 | 95.0% | 95.4% |
| 2jbwA01 | 1.20.1440.110 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase | 0.69 | 53.0 | 4.46e-01 | 83.3% | 72.8% |
| 7odyC01 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.68 | 52.0 | 4.55e-01 | 85.0% | 64.1% |
| 3uo2B02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.67 | 49.0 | 4.46e-01 | 80.0% | 84.5% |
| 4gpkB01 | 1.25.40.1000 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.65 | 45.0 | 3.93e-01 | 75.0% | 80.8% |
| 4dlqA02 | 1.25.40.610 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.64 | 47.0 | 4.07e-01 | 78.3% | 56.8% |
| 2lseA00 | 1.20.120.1360 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.64 | 49.0 | 4.23e-01 | 86.7% | 81.2% |
| 2yw6B00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.58 | 44.0 | 3.48e-01 | 88.3% | 65.3% |
| 5h41A01 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.58 | 47.0 | 2.87e-01 | 93.3% | 26.6% |
| 3x17A02 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.58 | 49.0 | 2.98e-01 | 100.0% | 48.9% |
| 1m4rB00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.57 | 48.0 | 3.80e-01 | 100.0% | 75.9% |
| 4dxwA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 44.0 | 3.71e-01 | 88.3% | 68.8% |
| 1a22A00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.56 | 47.0 | 3.47e-01 | 100.0% | 83.9% |
| 3ujpB01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.56 | 42.0 | 3.25e-01 | 83.3% | 89.2% |
| 6wm2P02 | 1.25.40.150 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › V-type ATPase, subunit H, C-terminal domain | 0.54 | 40.0 | 3.41e-01 | 83.3% | 49.5% |
| 4xrvB01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.54 | 38.0 | 2.95e-01 | 73.3% | 91.2% |
| 2qkdA02 | 2.60.120.1040 | Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain | 0.54 | 44.0 | 3.46e-01 | 95.0% | 48.6% |
| 2uvaG12 | 3.30.70.3330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 41.0 | 3.22e-01 | 83.3% | 84.4% |
| 1x0tA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.53 | 39.0 | 3.90e-01 | 100.0% | 77.0% |
| 2wauA01 | 1.20.1310.20 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Duffy-antigen binding domain | 0.51 | 41.0 | 3.10e-01 | 88.3% | 59.4% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4399436 | 601.54.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › low CO2-inducible protein LCI1 › low CO2-inducible protein LCI1 | 0.74 | 61.0 | 4.64e-01 | 91.7% | 85.7% |
| 3870316 | 150.3.1.10 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › CNTF | 0.66 | 57.0 | 4.08e-01 | 98.3% | 85.0% |
| 3392375 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.66 | 51.0 | 4.92e-01 | 86.7% | 88.6% |
| 4683232 | 3455.1.1.0 ↗ | alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors | 0.65 | 52.0 | 5.07e-01 | 88.3% | 90.8% |
| 3385476 | 2004.1.1.455 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 | 0.61 | 53.0 | 3.07e-01 | 100.0% | 14.4% |
| 4991095 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.57 | 43.0 | 3.28e-01 | 83.3% | 80.6% |