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js4906-25-2-S21_Prophage_curated_prodigal-single.1__X__X__00182
Bact-Virjs4906-25-2-S21_Prophage_curated_prodigal-single.1__X__X__00182
Identity
- Kingdom:
- phage
Quality
94.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 35-114
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xubA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 32.0 | 3.30e-01 | 83.7% | 55.1% |
| 5m99A02 | 3.90.400.10 | Alpha Beta › Alpha-Beta Complex › Oligo-1,6-glucosidase; domain 2 › Oligo-1,6-glucosidase; Domain 2 | 0.56 | 24.0 | 2.71e-01 | 85.0% | 46.2% |
| 3m8eA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 33.0 | 3.09e-01 | 83.7% | 44.6% |
| 4gyiA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 32.0 | 3.08e-01 | 83.7% | 49.5% |
| 3ezjA02 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.54 | 32.0 | 3.50e-01 | 86.3% | 70.6% |
| 2hgsA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.54 | 38.0 | 3.42e-01 | 95.0% | 53.2% |
| 3jcmH04 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.53 | 33.0 | 3.37e-01 | 90.0% | 64.9% |
| 3zihA00 | 3.30.110.150 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein | 0.53 | 32.0 | 3.23e-01 | 85.0% | 60.8% |
| 3ezuA02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.52 | 34.0 | 2.81e-01 | 87.5% | 37.2% |
| 2i4lA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.52 | 43.0 | 2.93e-01 | 97.5% | 67.4% |
| 3u1kB04 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.52 | 33.0 | 3.48e-01 | 88.7% | 72.2% |
| 3va7A05 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.51 | 33.0 | 3.10e-01 | 100.0% | 53.0% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3273469 | 101.1.2.281 ↗ | alpha arrays › HTH › HTH › winged helix domain › Tfb2 | 0.60 | 34.0 | 3.40e-01 | 83.7% | 53.0% |
| 139744 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 33.0 | 3.13e-01 | 83.7% | 46.4% |
| 4994983 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 36.0 | 3.86e-01 | 83.7% | 75.7% |
| 4968723 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 35.0 | 3.04e-01 | 87.5% | 43.3% |
| 3269719 | 304.8.1.54 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_13 | 0.54 | 35.0 | 3.16e-01 | 91.3% | 49.5% |
| 3308472 | 304.9.1.102 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_NFXL1 | 0.54 | 31.0 | 3.19e-01 | 87.5% | 57.5% |
| 3806127 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.53 | 35.0 | 3.63e-01 | 87.5% | 72.0% |
| 4979727 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.52 | 31.0 | 3.04e-01 | 87.5% | 54.1% |
| 4193195 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.52 | 32.0 | 3.57e-01 | 86.3% | 76.9% |
| 3689024 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.52 | 37.0 | 3.25e-01 | 77.5% | 95.4% |
| 4965712 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.51 | 34.0 | 3.23e-01 | 83.7% | 57.9% |
| 3924000 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.51 | 32.0 | 3.46e-01 | 87.5% | 74.3% |
| 4939406 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 35.0 | 2.71e-01 | 71.2% | 41.1% |
| 2604960 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.51 | 33.0 | 2.99e-01 | 82.5% | 49.1% |
| 3364025 | 101.1.2.245 ↗ | alpha arrays › HTH › HTH › winged helix domain › PORR | 0.50 | 37.0 | 2.53e-01 | 78.8% | 95.7% |
| 5011278 | 304.48.1.22 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GCH_III | 0.50 | 34.0 | 3.12e-01 | 87.5% | 52.3% |
| 5006816 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.50 | 32.0 | 3.29e-01 | 83.7% | 66.3% |
| 3502634 | 101.1.2.503 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF25875 | 0.50 | 29.0 | 3.15e-01 | 83.7% | 67.7% |
| 4941847 | 101.1.2.55 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB | 0.50 | 35.0 | 3.32e-01 | 72.5% | 86.3% |