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js4906-25-2-S21_Prophage_curated_prodigal-single.1__X__X__00200
Bact-Virjs4906-25-2-S21_Prophage_curated_prodigal-single.1__X__X__00200
Identity
- Kingdom:
- phage
Quality
69.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-64
Domain cluster:
rep: MK448706.1__QBX15888.1__Javan221_0030__00023__D2-53
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hfnA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.75 | 51.0 | 5.21e-01 | 96.8% | 73.3% |
| 2ej9A02 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 47.0 | 5.22e-01 | 93.7% | 89.8% |
| 4m78N00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 50.0 | 4.79e-01 | 98.4% | 76.1% |
| 5mkiH00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 48.0 | 4.64e-01 | 95.2% | 77.5% |
| 1wh2A01 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.59 | 37.0 | 3.81e-01 | 100.0% | 65.6% |
| 2mvzA00 | 2.40.100.10 | Mainly Beta › Beta Barrel › Cyclophilin › Cyclophilin-like | 0.59 | 49.0 | 3.92e-01 | 100.0% | 97.3% |
| 4c92G00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 51.0 | 4.80e-01 | 100.0% | 81.3% |
| 8inpA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.58 | 45.0 | 3.08e-01 | 87.3% | 27.8% |
| 4c92C00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 48.0 | 4.47e-01 | 96.8% | 82.3% |
| 2fb7A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 46.0 | 4.35e-01 | 98.4% | 86.3% |
| 8inhA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.53 | 46.0 | 3.11e-01 | 100.0% | 91.2% |
| 2gaxA00 | 3.40.1490.10 | Alpha Beta › 3-Layer(aba) Sandwich › Bit1 › Bit1 | 0.53 | 37.0 | 2.93e-01 | 73.0% | 94.8% |
| 1yvuA02 | 2.30.340.10 | Mainly Beta › Roll › PAZ domain fold › PAZ domain superfamily | 0.53 | 44.0 | 3.87e-01 | 92.1% | 81.7% |
| 7kggC02 | 3.30.2090.10 | Alpha Beta › 2-Layer Sandwich › Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains › Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains | 0.52 | 42.0 | 3.70e-01 | 87.3% | 80.4% |
| 2qqrA02 | 3.10.330.70 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.52 | 39.0 | 4.12e-01 | 93.7% | 100.0% |
| 8gjjC02 | 3.30.2090.10 | Alpha Beta › 2-Layer Sandwich › Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains › Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains | 0.52 | 42.0 | 3.66e-01 | 87.3% | 79.6% |
| 3zyvC06 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.52 | 37.0 | 2.50e-01 | 77.8% | 67.3% |
| 7wlvF02 | 3.30.2090.10 | Alpha Beta › 2-Layer Sandwich › Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains › Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains | 0.51 | 42.0 | 3.67e-01 | 88.9% | 81.5% |
| 3w9iA08 | 3.30.2090.10 | Alpha Beta › 2-Layer Sandwich › Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains › Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains | 0.51 | 40.0 | 3.64e-01 | 87.3% | 84.3% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4068448 | 207.1.1.283 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRRNT, LRR_8, LRRCT_2 | 0.67 | 44.0 | 3.18e-01 | 76.2% | 23.3% |
| 1406722 | 207.1.1.24 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_8 | 0.65 | 43.0 | 3.26e-01 | 76.2% | 26.5% |
| 5025086 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.60 | 46.0 | 4.88e-01 | 98.4% | 96.4% |
| 4015057 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 50.0 | 4.31e-01 | 98.4% | 83.0% |
| 3972526 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 48.0 | 4.71e-01 | 98.4% | 88.6% |
| 4117729 | 247.1.1.24 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B+Lactamase_B_2 | 0.55 | 34.0 | 2.22e-01 | 87.3% | 12.8% |
| 4483969 | 247.1.1.29 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2, Anti-Pycsar_Apyc1 | 0.55 | 34.0 | 2.20e-01 | 87.3% | 12.4% |
| 3866524 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.55 | 40.0 | 2.89e-01 | 100.0% | 25.5% |
| 5073814 | 4294.1.1.2 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Trm112p | 0.54 | 43.0 | 3.06e-01 | 92.1% | 93.3% |
| 4170217 | 247.1.1.33 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B, Lactamase_B_2, Anti-Pycsar_Apyc1 | 0.54 | 33.0 | 2.16e-01 | 84.1% | 12.1% |
| 4031690 | 304.28.2.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB TolC docking domain | 0.53 | 42.0 | 4.18e-01 | 85.7% | 83.1% |
| 4108298 | 247.1.1.35 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2, Lactamase_B_4, Anti-Pycsar_Apyc1 | 0.53 | 32.0 | 2.14e-01 | 87.3% | 12.5% |
| 4465856 | 247.1.1.33 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B, Lactamase_B_2, Anti-Pycsar_Apyc1 | 0.53 | 32.0 | 2.14e-01 | 87.3% | 12.5% |
| 4148322 | 247.1.1.29 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2, Anti-Pycsar_Apyc1 | 0.53 | 32.0 | 2.14e-01 | 87.3% | 12.5% |
| 3974534 | 304.28.2.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB TolC docking domain › ACR_tran | 0.53 | 42.0 | 3.74e-01 | 87.3% | 82.2% |
| 3760738 | 4357.1.1.9 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE, WWE_3 | 0.52 | 42.0 | 3.26e-01 | 90.5% | 43.0% |
| 3945851 | 304.28.2.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB TolC docking domain › ACR_tran | 0.52 | 41.0 | 3.80e-01 | 87.3% | 88.2% |
| 3838672 | 304.28.2.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB TolC docking domain › ACR_tran | 0.52 | 42.0 | 3.73e-01 | 87.3% | 83.3% |
| 3948380 | 304.28.2.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB TolC docking domain | 0.52 | 41.0 | 3.72e-01 | 85.7% | 89.4% |
| 3972319 | 304.28.2.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB TolC docking domain | 0.52 | 41.0 | 4.12e-01 | 87.3% | 83.1% |
| 3973578 | 304.28.2.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB TolC docking domain | 0.52 | 42.0 | 3.73e-01 | 87.3% | 82.2% |
| 3943485 | 304.28.2.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB TolC docking domain › ACR_tran | 0.52 | 42.0 | 3.70e-01 | 87.3% | 82.2% |
| 2099407 | 304.28.2.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB TolC docking domain › ACR_tran | 0.51 | 39.0 | 3.61e-01 | 85.7% | 86.0% |
| 3839314 | 304.28.2.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB TolC docking domain › ACR_tran | 0.51 | 41.0 | 3.65e-01 | 87.3% | 83.3% |
| 5045430 | 2003.1.5.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase | 0.51 | 39.0 | 2.29e-01 | 85.7% | 33.6% |
| 4278907 | 304.28.2.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB TolC docking domain › ACR_tran | 0.51 | 40.0 | 3.60e-01 | 87.3% | 83.3% |
| 3386849 | 304.28.2.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB TolC docking domain | 0.51 | 40.0 | 3.58e-01 | 87.3% | 84.4% |
| 4596612 | 304.28.2.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB TolC docking domain › ACR_tran | 0.51 | 41.0 | 3.73e-01 | 88.9% | 87.1% |
| 4097780 | 304.28.2.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB TolC docking domain | 0.51 | 39.0 | 3.90e-01 | 87.3% | 83.1% |
| 3971886 | 304.28.2.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB TolC docking domain | 0.51 | 39.0 | 3.53e-01 | 85.7% | 84.4% |
D2
high
residues 72-176
Domain cluster:
rep: PHAGE-A3--js4906-20-2_S1_scaffold_104-98_curated_closed_complete_prodigal-single.1__X__X__00135__D11-106
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6lccA01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.61 | 39.0 | 2.72e-01 | 75.2% | 18.8% |
| 6qavC02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.57 | 48.0 | 4.01e-01 | 93.3% | 73.9% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3261408 | 109.4.1.404 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fes1 | 0.61 | 34.0 | 2.25e-01 | 83.8% | 14.5% |
| 4267118 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.55 | 47.0 | 3.09e-01 | 97.1% | 80.3% |
| 3499951 | 188.1.1.0 ↗ | alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain | 0.54 | 41.0 | 3.10e-01 | 79.0% | 34.1% |
| 5032125 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 41.0 | 3.11e-01 | 81.9% | 71.9% |
| 3771989 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.53 | 34.0 | 3.16e-01 | 74.3% | 50.4% |
| 4956455 | 4163.1.2.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF2 C-terminal domain-like | 0.52 | 30.0 | 3.07e-01 | 83.8% | 58.0% |
| 3415337 | 5050.1.1.22 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1_like | 0.52 | 38.0 | 2.80e-01 | 78.1% | 60.8% |
| 3899135 | 101.1.1.66 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_5 | 0.52 | 40.0 | 4.03e-01 | 82.9% | 91.4% |
| 5000805 | 327.11.2.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 | 0.51 | 30.0 | 3.24e-01 | 82.9% | 67.0% |
| 3630462 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.51 | 33.0 | 3.01e-01 | 75.2% | 48.6% |
D3
high
residues 185-275