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js4906-25-2-S21_Prophage_curated_prodigal-single.1__X__X__00201
Bact-Virjs4906-25-2-S21_Prophage_curated_prodigal-single.1__X__X__00201
Identity
- Kingdom:
- phage
Quality
57.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 215-317
D2
high
residues 325-419
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2yadA00 | 3.30.390.150 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.58 | 36.0 | 4.01e-01 | 78.9% | 77.9% |
| 2qm4A01 | 2.170.210.10 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal | 0.55 | 40.0 | 3.60e-01 | 80.0% | 90.2% |
| 1fu1A01 | 2.170.210.10 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal | 0.53 | 37.0 | 3.47e-01 | 72.6% | 98.3% |
| 7oo1A01 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.51 | 29.0 | 3.14e-01 | 89.5% | 67.5% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3519023 | 3964.1.1.1 ↗ | beta meanders › OCRE domain of RBM10 › OCRE domain of RBM10 › OCRE domain of RBM10 › OCRE | 0.62 | 31.0 | 3.35e-01 | 96.8% | 56.2% |
| 3249996 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.60 | 42.0 | 4.77e-01 | 91.6% | 100.0% |
| 3343688 | 4104.1.1.0 ↗ | beta sandwiches › EscU C-terminal domain-like › EscU C-terminal domain-like › EscU C-terminal domain-like | 0.58 | 43.0 | 4.17e-01 | 78.9% | 100.0% |
| 3555753 | 11.1.1.430 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRAP-delta | 0.53 | 39.0 | 3.40e-01 | 75.8% | 71.7% |
| 3773112 | 5.1.4.94 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Det1 | 0.53 | 43.0 | 2.99e-01 | 90.5% | 87.6% |
| 3399942 | 9.1.1.49 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7043 | 0.52 | 46.0 | 4.28e-01 | 96.8% | 100.0% |
| 5028231 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.52 | 34.0 | 3.31e-01 | 75.8% | 56.6% |
| 3740272 | 5.1.4.32 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N | 0.51 | 43.0 | 2.81e-01 | 91.6% | 92.9% |
| 4981188 | 1.1.15.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like | 0.50 | 29.0 | 3.06e-01 | 91.6% | 62.4% |
| 4999764 | 325.1.7.4 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › GCV_H | 0.50 | 40.0 | 3.61e-01 | 89.5% | 89.3% |
D3
medium
residues 6-148
D4
medium
residues 149-214