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js4906-25-2-S21_Prophage_curated_prodigal-single.1__X__X__00217
Bact-Virjs4906-25-2-S21_Prophage_curated_prodigal-single.1__X__X__00217
Identity
- Kingdom:
- phage
Quality
92.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-85_142-171
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3edpA02 | 3.40.1410.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like | 0.64 | 58.0 | 5.38e-01 | 100.0% | 86.3% |
| 3l5zA01 | 3.40.1410.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like | 0.64 | 58.0 | 5.48e-01 | 100.0% | 96.3% |
| 2ikkA00 | 3.40.1410.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like | 0.63 | 57.0 | 5.30e-01 | 100.0% | 91.1% |
| 3f8lB00 | 3.40.1410.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like | 0.63 | 58.0 | 5.07e-01 | 100.0% | 77.8% |
| 3cnvA01 | 3.40.1410.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like | 0.62 | 57.0 | 5.13e-01 | 100.0% | 87.1% |
| 3ddvB01 | 3.40.1410.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like | 0.62 | 55.0 | 5.27e-01 | 100.0% | 97.8% |
| 3bwgA02 | 3.40.1410.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like | 0.62 | 56.0 | 5.07e-01 | 100.0% | 84.1% |
| 2p19A01 | 3.40.1410.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like | 0.61 | 56.0 | 5.37e-01 | 100.0% | 96.9% |
| 2ooiA01 | 3.40.1410.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like | 0.61 | 56.0 | 5.05e-01 | 100.0% | 86.4% |
D2
medium
residues 86-141
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4xpmB00 | 3.40.1840.10 | Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like | 0.59 | 45.0 | 4.32e-01 | 85.7% | 83.6% |
| 2ktsA01 | 2.40.128.270 | Mainly Beta › Beta Barrel › Lipocalin › | 0.58 | 49.0 | 4.06e-01 | 96.4% | 99.0% |
| 7yh1A01 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.54 | 43.0 | 3.54e-01 | 92.9% | 72.8% |
| 3oguA03 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.54 | 39.0 | 3.20e-01 | 83.9% | 89.4% |
| 3a2kA03 | 3.30.465.60 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.54 | 41.0 | 3.68e-01 | 87.5% | 73.3% |
| 4qrlA00 | 2.40.128.280 | Mainly Beta › Beta Barrel › Lipocalin › | 0.53 | 44.0 | 3.59e-01 | 96.4% | 94.5% |
| 4gq1A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 45.0 | 2.79e-01 | 98.2% | 98.0% |
| 4a2lF02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 43.0 | 2.70e-01 | 91.1% | 98.1% |
| 2k3iA01 | 3.30.70.860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 40.0 | 3.60e-01 | 87.5% | 94.1% |
| 2yj6A02 | 3.40.1110.10 | Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N | 0.52 | 42.0 | 3.70e-01 | 96.4% | 93.7% |
| 2x45A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 43.0 | 3.31e-01 | 96.4% | 60.4% |
| 3uebF00 | 3.30.300.100 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like | 0.51 | 40.0 | 3.35e-01 | 87.5% | 96.0% |
| 2oqbA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 42.0 | 3.52e-01 | 98.2% | 73.1% |
| 5hsqA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.50 | 39.0 | 3.24e-01 | 96.4% | 70.5% |
| 3ms6A00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.50 | 42.0 | 3.71e-01 | 98.2% | 82.2% |
| 3gqwB01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.50 | 40.0 | 2.48e-01 | 100.0% | 89.3% |
| 7l59A02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.50 | 36.0 | 3.06e-01 | 82.1% | 70.0% |
| 3hunA01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.50 | 43.0 | 2.76e-01 | 100.0% | 89.3% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4637311 | 3018.1.1.1 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS | 0.63 | 48.0 | 4.05e-01 | 85.7% | 97.0% |
| 3332372 | 312.1.1.8 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › DcpS_C | 0.62 | 42.0 | 3.20e-01 | 73.2% | 30.3% |
| 3164171 | 3018.1.1.1 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS | 0.61 | 47.0 | 4.11e-01 | 87.5% | 95.6% |
| 4099392 | 3018.1.1.1 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS | 0.61 | 46.0 | 4.03e-01 | 87.5% | 91.6% |
| 4587906 | 3018.1.1.1 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS | 0.61 | 47.0 | 4.01e-01 | 89.3% | 92.0% |
| 4388719 | 3018.1.1.1 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS | 0.60 | 45.0 | 4.02e-01 | 87.5% | 92.2% |
| 4433852 | 3018.1.1.1 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS | 0.59 | 47.0 | 3.93e-01 | 91.1% | 97.1% |
| 4944328 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.59 | 47.0 | 3.71e-01 | 92.9% | 79.2% |
| 4159968 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.58 | 47.0 | 4.03e-01 | 92.9% | 95.8% |
| 4166150 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.58 | 44.0 | 3.78e-01 | 89.3% | 88.6% |
| 4448833 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.57 | 44.0 | 3.85e-01 | 87.5% | 96.7% |
| 5045003 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.57 | 48.0 | 4.23e-01 | 96.4% | 65.9% |
| 5071935 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.56 | 46.0 | 3.55e-01 | 92.9% | 59.2% |
| 3587052 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.56 | 41.0 | 3.49e-01 | 100.0% | 47.4% |
| 4566258 | 3018.1.1.1 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS | 0.56 | 43.0 | 3.79e-01 | 89.3% | 95.6% |
| 3600529 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.55 | 47.0 | 3.85e-01 | 96.4% | 94.3% |
| 4125300 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.55 | 42.0 | 3.71e-01 | 87.5% | 97.8% |
| 3646167 | 3887.2.1.0 ↗ | a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 | 0.55 | 47.0 | 4.09e-01 | 98.2% | 92.2% |
| 3605262 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.55 | 46.0 | 3.74e-01 | 96.4% | 92.7% |
| 5028564 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.54 | 42.0 | 3.47e-01 | 85.7% | 54.1% |
| 4566842 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.54 | 41.0 | 3.66e-01 | 87.5% | 97.8% |
| 4029825 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.54 | 40.0 | 3.69e-01 | 87.5% | 84.5% |
| 3677320 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.54 | 43.0 | 2.68e-01 | 91.1% | 48.8% |
| 3604040 | 304.57.1.1 ↗ | a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 | 0.53 | 42.0 | 3.37e-01 | 96.4% | 59.7% |
| 5065544 | 304.1.1.1 ↗ | a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C | 0.53 | 45.0 | 3.34e-01 | 100.0% | 93.9% |
| 3601552 | 9.1.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › META | 0.53 | 44.0 | 3.61e-01 | 96.4% | 92.7% |
| 3169052 | 3561.1.1.1 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Med17 | 0.53 | 45.0 | 2.63e-01 | 96.4% | 18.4% |
| 4623762 | 3018.1.1.1 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS | 0.53 | 38.0 | 3.38e-01 | 85.7% | 92.0% |
| 3387987 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.53 | 39.0 | 3.44e-01 | 85.7% | 52.6% |
| 4612673 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.53 | 39.0 | 3.36e-01 | 87.5% | 99.0% |
| 4420610 | 3018.1.1.1 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS | 0.52 | 41.0 | 3.66e-01 | 92.9% | 98.9% |
| 5002344 | 304.51.1.11 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas6b_N | 0.52 | 42.0 | 3.57e-01 | 96.4% | 87.6% |
| 4061974 | 3018.1.1.1 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS | 0.52 | 40.0 | 3.56e-01 | 91.1% | 95.6% |
| 5041620 | 2492.1.1.18 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB | 0.52 | 36.0 | 2.53e-01 | 75.0% | 69.3% |
| 3924077 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.52 | 39.0 | 3.50e-01 | 82.1% | 88.7% |
| 4467967 | 206.1.3.8 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 | 0.51 | 45.0 | 2.88e-01 | 100.0% | 67.2% |
| 4346141 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.51 | 37.0 | 3.33e-01 | 85.7% | 98.9% |
| 3691930 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.51 | 38.0 | 3.45e-01 | 80.4% | 96.2% |
| 3325906 | 3887.2.1.1 ↗ | a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung | 0.51 | 43.0 | 3.55e-01 | 98.2% | 75.5% |
| 4018552 | 2003.1.5.73 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 | 0.51 | 43.0 | 2.77e-01 | 98.2% | 49.7% |
| 4146498 | 220.1.1.25 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › CARM1 | 0.50 | 43.0 | 3.59e-01 | 98.2% | 75.0% |
| 3193204 | 2003.1.5.73 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 | 0.50 | 42.0 | 2.68e-01 | 98.2% | 57.4% |