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js4906-25-2-S21_Prophage_curated_prodigal-single.1__X__X__00226
Bact-Virjs4906-25-2-S21_Prophage_curated_prodigal-single.1__X__X__00226
Identity
- Kingdom:
- phage
Quality
88.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-54
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1tc3C00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.86 | 52.0 | 5.17e-01 | 100.0% | 60.8% |
| 2r0qC02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.81 | 49.0 | 4.75e-01 | 100.0% | 56.4% |
| 4fcyA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.77 | 55.0 | 4.74e-01 | 100.0% | 48.7% |
| 3bosA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.71 | 51.0 | 4.63e-01 | 76.0% | 56.7% |
| 1ma1A01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.71 | 47.0 | 4.41e-01 | 70.0% | 54.7% |
| 2be4A02 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.70 | 51.0 | 4.05e-01 | 78.0% | 51.5% |
| 1o82A00 | 1.20.225.10 | Mainly Alpha › Up-down Bundle › Bacteriocin As-48; Chain A › Bacteriocin AS-48 | 0.66 | 44.0 | 4.03e-01 | 100.0% | 50.0% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.66 | 46.0 | 3.86e-01 | 76.0% | 42.0% |
| 2j4jF00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.62 | 54.0 | 3.54e-01 | 100.0% | 60.6% |
| 2cobA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.62 | 39.0 | 4.09e-01 | 100.0% | 72.7% |
| 3zssA02 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.59 | 49.0 | 4.25e-01 | 96.0% | 77.2% |
| 3rmqA02 | 6.10.140.1650 | Special › Helix non-globular › Helix Hairpins › | 0.56 | 48.0 | 4.68e-01 | 96.0% | 89.3% |
| 2v9kA01 | 1.10.10.2050 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.53 | 43.0 | 4.35e-01 | 100.0% | 86.0% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4932940 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.93 | 72.0 | 5.39e-01 | 86.0% | 37.3% |
| 5028770 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.83 | 58.0 | 6.43e-01 | 100.0% | 92.5% |
| 5003561 | 101.1.1.545 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF1699 | 0.80 | 58.0 | 6.07e-01 | 100.0% | 84.4% |
| 4947464 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.78 | 49.0 | 4.72e-01 | 100.0% | 58.2% |
| 3464621 | 2484.1.1.131 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_21 | 0.76 | 60.0 | 3.64e-01 | 100.0% | 13.5% |
| 3754639 | 150.5.1.106 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › LIN9_C | 0.75 | 49.0 | 4.10e-01 | 70.0% | 40.0% |
| 3314545 | 4030.1.1.0 ↗ | alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz | 0.75 | 60.0 | 5.53e-01 | 98.0% | 69.2% |
| 3812214 | 170.1.1.15 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › Retrotran_gag_2 | 0.74 | 60.0 | 4.97e-01 | 98.0% | 50.0% |
| 3889409 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.72 | 52.0 | 3.38e-01 | 74.0% | 17.2% |
| 3563724 | 386.1.1.205 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › KRAB | 0.72 | 65.0 | 6.33e-01 | 100.0% | 96.4% |
| 3368509 | 170.1.1.15 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › Retrotran_gag_2 | 0.72 | 58.0 | 4.82e-01 | 98.0% | 50.0% |
| 5001327 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.72 | 49.0 | 3.95e-01 | 70.0% | 40.0% |
| 4469296 | 3809.1.1.2 ↗ | alpha bundles › Uncharacterized protein CV0426 › Uncharacterized protein CV0426 › Uncharacterized protein CV0426 › Caudo_TAP | 0.71 | 48.0 | 4.29e-01 | 70.0% | 90.0% |
| 4359331 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.70 | 48.0 | 4.54e-01 | 72.0% | 68.3% |
| 4959580 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.67 | 45.0 | 4.53e-01 | 100.0% | 70.0% |
| 5043976 | 3678.1.1.0 ↗ | alpha arrays › Pilus-presented adhesin helical insertion domain › Pilus-presented adhesin helical insertion domain › Pilus-presented adhesin helical insertion domain | 0.66 | 55.0 | 4.31e-01 | 100.0% | 50.0% |
| 5062796 | 109.4.1.198 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 | 0.65 | 56.0 | 3.56e-01 | 98.0% | 21.6% |
| 3912246 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.64 | 55.0 | 4.22e-01 | 96.0% | 73.0% |
| 3369321 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.63 | 48.0 | 4.58e-01 | 100.0% | 71.7% |
| 5059049 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.62 | 56.0 | 3.41e-01 | 100.0% | 16.9% |
| 3934751 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.60 | 46.0 | 4.46e-01 | 100.0% | 75.0% |
| 4954371 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.57 | 43.0 | 3.99e-01 | 100.0% | 62.9% |