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js4906-25-2-S21_Prophage_curated_prodigal-single.1__X__X__00239
Bact-Virjs4906-25-2-S21_Prophage_curated_prodigal-single.1__X__X__00239
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-116
Domain cluster:
rep: rifoxyb1_full_scaffold_4_prodigal-single.1__X__X__00008__D11-120
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2i9xA00 | 3.30.1120.40 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Stage V sporulation protein G | 0.84 | 61.0 | 6.98e-01 | 92.2% | 100.0% |
| 1llnA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.59 | 42.0 | 3.71e-01 | 75.7% | 97.1% |
| 3ctkA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.58 | 42.0 | 3.70e-01 | 73.9% | 95.8% |
| 4geqB00 | 3.30.160.430 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.58 | 23.0 | 3.16e-01 | 84.3% | 70.7% |
| 1ib8A02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.56 | 24.0 | 2.97e-01 | 75.7% | 59.7% |
| 1e3hA03 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.56 | 41.0 | 3.38e-01 | 78.3% | 51.6% |
| 5mmiG01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.54 | 32.0 | 3.75e-01 | 73.9% | 82.1% |
| 6qp7A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 37.0 | 2.45e-01 | 73.9% | 33.3% |
| 1js3A03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 30.0 | 3.22e-01 | 70.4% | 66.0% |
| 2ciuA00 | 3.10.450.320 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 | 0.52 | 38.0 | 3.73e-01 | 75.7% | 84.6% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4053035 | 4180.1.1.1 ↗ | a+b two layers › SpoVG-like › SpoVG-like › SpoVG-like › SpoVG | 0.86 | 62.0 | 7.14e-01 | 91.3% | 100.0% |
| 4338613 | 4180.1.1.1 ↗ | a+b two layers › SpoVG-like › SpoVG-like › SpoVG-like › SpoVG | 0.85 | 61.0 | 7.10e-01 | 92.2% | 100.0% |
| 2755218 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.74 | 33.0 | 2.66e-01 | 79.1% | 23.8% |
| 3899253 | 3957.1.1.0 ↗ | a+b two layers › EKC/KEOPS complex subunit GON7 › EKC/KEOPS complex subunit GON7 › EKC/KEOPS complex subunit GON7 | 0.72 | 28.0 | 4.57e-01 | 74.8% | 95.6% |
| 3990496 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.60 | 32.0 | 3.94e-01 | 85.2% | 84.3% |
| 3633198 | 67.1.1.0 ↗ | beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain | 0.56 | 34.0 | 3.81e-01 | 99.1% | 77.8% |
| 4962934 | 331.2.1.15 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › DUF7845 | 0.56 | 48.0 | 4.33e-01 | 94.8% | 68.8% |
| 3455686 | 844.1.1.5 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › DUF3527 | 0.55 | 45.0 | 3.52e-01 | 88.7% | 81.5% |
| 4962034 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.52 | 40.0 | 3.69e-01 | 80.0% | 80.0% |
| 3784810 | 216.1.1.20 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like | 0.51 | 33.0 | 3.56e-01 | 73.0% | 77.9% |
| 3510894 | 844.1.1.1 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Tub | 0.51 | 45.0 | 3.58e-01 | 98.3% | 58.7% |
| 3943569 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.50 | 40.0 | 3.64e-01 | 93.9% | 61.2% |