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js4906-26-2_S25_scaffold_167_prodigal-single.1__X__X__00065
Bact-Virjs4906-26-2_S25_scaffold_167_prodigal-single.1__X__X__00065
Identity
- Kingdom:
- phage
Quality
83.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 36-75
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kk7A01 | 3.30.420.400 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.61 | 42.0 | 3.01e-01 | 72.5% | 26.6% |
| 2v8pA01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.59 | 37.0 | 2.53e-01 | 80.0% | 14.8% |
| 1rf6A01 | 3.65.10.10 | Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain | 0.57 | 42.0 | 2.82e-01 | 95.0% | 74.7% |
| 5da9A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 43.0 | 2.61e-01 | 100.0% | 66.0% |
| 6swc801 | 3.30.30.170 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › | 0.53 | 37.0 | 2.80e-01 | 82.5% | 25.9% |
| 2ghfA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.53 | 42.0 | 3.42e-01 | 100.0% | 83.1% |
| 1g0hA01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.52 | 41.0 | 2.91e-01 | 92.5% | 43.8% |
| 1lvoA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.51 | 39.0 | 3.08e-01 | 87.5% | 78.4% |
| 4gaaA01 | 2.60.40.1730 | Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain | 0.50 | 40.0 | 2.69e-01 | 100.0% | 37.8% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3943642 | 375.1.1.130 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_Tnp_IS1 | 0.78 | 57.0 | 5.48e-01 | 77.5% | 71.1% |
| 3976145 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.75 | 55.0 | 5.36e-01 | 87.5% | 71.1% |
| 4966194 | 375.1.1.130 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_Tnp_IS1 | 0.73 | 51.0 | 4.96e-01 | 85.0% | 66.7% |
| 4226251 | 375.1.1.252 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF27302 | 0.69 | 52.0 | 4.57e-01 | 82.5% | 65.0% |
| 4276264 | 375.8.1.5 ↗ | few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › PF26372 | 0.63 | 45.0 | 4.43e-01 | 95.0% | 71.1% |
| 4438701 | 375.1.1.272 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF26372 | 0.62 | 44.0 | 4.25e-01 | 95.0% | 65.3% |
| 4948719 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.59 | 43.0 | 3.34e-01 | 82.5% | 34.0% |
| 3737515 | 109.4.1.363 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tcf25 | 0.56 | 42.0 | 2.45e-01 | 85.0% | 10.4% |
| 4962743 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 41.0 | 4.03e-01 | 85.0% | 75.6% |
| 4522746 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.54 | 37.0 | 2.63e-01 | 75.0% | 25.8% |
| 3171402 | 2002.1.1.56 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Dus | 0.54 | 41.0 | 2.49e-01 | 100.0% | 86.6% |
| 3622287 | 109.6.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF,RasGEF_N | 0.51 | 38.0 | 2.27e-01 | 90.0% | 27.7% |