←Back to structures
js4906-26-2_S25_scaffold_55_prodigal-single.1__X__X__00226
Bact-Virjs4906-26-2_S25_scaffold_55_prodigal-single.1__X__X__00226
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 20-27_156-252
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2bkyX00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.72 | 38.0 | 4.16e-01 | 100.0% | 62.8% |
| 1vm0A00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.69 | 36.0 | 3.81e-01 | 100.0% | 55.9% |
| 1qz8A01 | 2.40.10.250 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 | 0.60 | 31.0 | 3.11e-01 | 100.0% | 49.5% |
| 4za1C00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 29.0 | 3.14e-01 | 100.0% | 59.8% |
| 2dmcA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 27.0 | 3.12e-01 | 99.0% | 64.9% |
| 3go9A02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.53 | 33.0 | 2.61e-01 | 100.0% | 29.5% |
| 4lr4A01 | 2.60.120.1420 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 31.0 | 2.62e-01 | 100.0% | 35.2% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5028837 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.65 | 30.0 | 3.69e-01 | 97.1% | 67.1% |
| 3804622 | 387.1.5.7 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › SCRL | 0.63 | 37.0 | 4.56e-01 | 100.0% | 93.8% |
| 3808479 | 387.1.5.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like | 0.63 | 35.0 | 4.55e-01 | 100.0% | 96.7% |
| 3250183 | 4956.1.1.0 ↗ | a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.62 | 31.0 | 3.85e-01 | 99.0% | 75.7% |
| 3633052 | 304.61.1.1 ↗ | a+b two layers › Alpha-beta plaits › Aldoxime dehydratase › Aldoxime dehydratase › Dehydratase_hem | 0.60 | 34.0 | 3.09e-01 | 100.0% | 41.4% |
| 3592426 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.56 | 35.0 | 2.33e-01 | 100.0% | 14.9% |
| 3931469 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.55 | 33.0 | 2.37e-01 | 100.0% | 18.5% |
| 3816949 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.53 | 29.0 | 2.17e-01 | 100.0% | 18.6% |
| 3874132 | 220.1.1.170 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_alsin | 0.52 | 38.0 | 3.71e-01 | 76.2% | 85.2% |
| 3723425 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.51 | 33.0 | 2.29e-01 | 100.0% | 20.6% |
D2
high
residues 33-139
Domain cluster:
representative
CATH (55)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ydxA02 | 1.10.287.1120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein | 0.71 | 40.0 | 4.32e-01 | 95.3% | 65.6% |
| 2dg7A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.68 | 51.0 | 4.27e-01 | 90.7% | 45.7% |
| 2p0tA01 | 1.10.60.30 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › PSPTO4464-like domains | 0.68 | 34.0 | 3.93e-01 | 72.9% | 65.8% |
| 2b5uA02 | 1.10.287.620 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins | 0.66 | 42.0 | 3.58e-01 | 90.7% | 42.9% |
| 4adnA01 | 1.20.1280.250 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.65 | 38.0 | 4.19e-01 | 84.1% | 71.8% |
| 1dd5A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.62 | 50.0 | 5.06e-01 | 88.8% | 89.0% |
| 3a8pA02 | 6.10.140.680 | Special › Helix non-globular › Helix Hairpins › | 0.62 | 44.0 | 4.31e-01 | 79.4% | 68.4% |
| 6e1kA01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.61 | 47.0 | 4.63e-01 | 80.4% | 91.1% |
| 1yc9A01 | 1.20.1600.10 | Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.61 | 47.0 | 3.31e-01 | 81.3% | 73.4% |
| 4kb2A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.60 | 48.0 | 4.83e-01 | 87.9% | 89.9% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.60 | 37.0 | 4.30e-01 | 93.5% | 84.4% |
| 2rpaA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.60 | 31.0 | 3.54e-01 | 74.8% | 66.2% |
| 4ioeA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.60 | 37.0 | 4.00e-01 | 89.7% | 74.7% |
| 6ynwH01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.60 | 39.0 | 4.46e-01 | 82.2% | 94.6% |
| 3r6nA02 | 1.20.58.1060 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 42.0 | 3.73e-01 | 72.9% | 73.5% |
| 2wzkA01 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.59 | 42.0 | 4.08e-01 | 86.9% | 64.6% |
| 4flaC00 | 6.10.250.2560 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.58 | 39.0 | 3.71e-01 | 94.4% | 57.5% |
| 3ma5A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.58 | 31.0 | 3.39e-01 | 86.9% | 60.0% |
| 4hteA02 | 1.20.58.1740 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 41.0 | 4.02e-01 | 73.8% | 78.6% |
| 3k29A00 | 1.10.287.1700 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.58 | 42.0 | 3.60e-01 | 86.9% | 49.7% |
| 4gywA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.57 | 29.0 | 2.99e-01 | 86.9% | 46.7% |
| 3s84A02 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.56 | 42.0 | 3.75e-01 | 79.4% | 62.4% |
| 2v0oB00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.56 | 44.0 | 3.31e-01 | 84.1% | 48.3% |
| 3i9wA00 | 1.20.58.920 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 44.0 | 3.21e-01 | 81.3% | 48.5% |
| 3rkgA02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.56 | 44.0 | 3.93e-01 | 87.9% | 68.3% |
| 4v1gA00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.56 | 39.0 | 4.34e-01 | 88.8% | 91.8% |
| 3l8rA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.56 | 43.0 | 4.46e-01 | 86.9% | 87.3% |
| 3cazB00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.56 | 41.0 | 3.38e-01 | 78.5% | 74.8% |
| 2q12A00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.56 | 42.0 | 3.27e-01 | 81.3% | 55.8% |
| 3vayA02 | 1.20.120.1600 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.55 | 35.0 | 3.90e-01 | 91.6% | 80.5% |
| 5ux2B01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.55 | 48.0 | 3.83e-01 | 97.2% | 91.6% |
| 1rq0A01 | 6.10.140.160 | Special › Helix non-globular › Helix Hairpins › | 0.55 | 33.0 | 3.73e-01 | 92.5% | 78.3% |
| 7xxiA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.54 | 42.0 | 3.17e-01 | 85.0% | 80.3% |
| 2h7oA02 | 1.20.58.1230 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Rac1-binding domain, C-terminal subdomain | 0.54 | 48.0 | 4.37e-01 | 100.0% | 80.3% |
| 1fioA00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 43.0 | 3.58e-01 | 88.8% | 48.4% |
| 1vcsA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.53 | 39.0 | 3.96e-01 | 81.3% | 79.4% |
| 3rx6A00 | 1.20.58.1090 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phage polarity suppression protein monomer | 0.53 | 42.0 | 3.55e-01 | 85.0% | 59.4% |
| 3caxA01 | 1.20.120.520 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like | 0.53 | 41.0 | 3.33e-01 | 83.2% | 58.1% |
| 3rq9A00 | 1.10.287.2500 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 37.0 | 4.29e-01 | 96.3% | 100.0% |
| 1zymA02 | 1.10.274.10 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain | 0.52 | 39.0 | 3.69e-01 | 77.6% | 92.9% |
| 1bf5A01 | 1.20.1050.20 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › STAT transcription factor, all-alpha domain | 0.52 | 42.0 | 3.67e-01 | 87.9% | 74.4% |
| 1x04A00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.52 | 41.0 | 3.35e-01 | 84.1% | 54.5% |
| 2oduA02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 44.0 | 4.44e-01 | 100.0% | 93.3% |
| 4k5yA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.52 | 40.0 | 3.18e-01 | 85.0% | 81.9% |
| 2etdA00 | 1.20.1440.20 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › LemA-like domain | 0.52 | 43.0 | 3.99e-01 | 91.6% | 98.6% |
| 1i4dA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.52 | 41.0 | 3.43e-01 | 85.0% | 51.1% |
| 2i0mA01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.51 | 40.0 | 4.03e-01 | 90.7% | 85.8% |
| 3edvB01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 41.0 | 3.82e-01 | 87.9% | 69.1% |
| 1zpyA00 | 6.10.140.1960 | Special › Helix non-globular › Helix Hairpins › | 0.51 | 33.0 | 3.58e-01 | 85.0% | 76.9% |
| 2efkA01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.51 | 41.0 | 3.08e-01 | 86.0% | 54.2% |
| 3edvA02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 44.0 | 3.68e-01 | 100.0% | 55.2% |
| 1u5pA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 39.0 | 3.94e-01 | 84.1% | 82.4% |
| 2vzbB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.50 | 42.0 | 3.71e-01 | 94.4% | 85.6% |
| 1lvfB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.50 | 39.0 | 4.00e-01 | 84.1% | 91.3% |
| 3jrtA00 | 1.20.120.1060 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.50 | 38.0 | 3.36e-01 | 82.2% | 78.9% |
ECOD (63)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3965783 | 3758.2.1.1 ↗ | alpha bundles › Bacterial hemolysins-like › Biopolymer transport protein ExbB › Biopolymer transport protein ExbB › MotA_ExbB | 0.63 | 44.0 | 3.48e-01 | 72.0% | 54.4% |
| 4427252 | 3831.1.1.1 ↗ | alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › LprI | 0.61 | 38.0 | 3.86e-01 | 82.2% | 63.8% |
| 5070526 | 633.21.1.0 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 | 0.60 | 36.0 | 3.61e-01 | 98.1% | 58.3% |
| 3704762 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.58 | 41.0 | 3.94e-01 | 83.2% | 62.4% |
| 3705984 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 51.0 | 3.89e-01 | 98.1% | 40.8% |
| 5060847 | 632.15.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) | 0.58 | 42.0 | 3.97e-01 | 75.7% | 72.3% |
| 3744696 | 603.1.1.2 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Not3 | 0.57 | 41.0 | 4.16e-01 | 83.2% | 76.2% |
| 3488877 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.57 | 44.0 | 3.37e-01 | 84.1% | 56.2% |
| 3400732 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.57 | 44.0 | 4.28e-01 | 86.9% | 74.2% |
| 2703780 | 3684.1.1.0 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like | 0.57 | 42.0 | 3.68e-01 | 80.4% | 96.0% |
| 4024704 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.57 | 40.0 | 3.81e-01 | 74.8% | 60.8% |
| 4108644 | 603.1.1.215 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27853 | 0.56 | 45.0 | 4.48e-01 | 90.7% | 84.5% |
| 3702979 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.56 | 42.0 | 2.84e-01 | 80.4% | 50.6% |
| 3992590 | 603.1.1.110 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF26585 | 0.56 | 44.0 | 4.54e-01 | 86.9% | 91.0% |
| 156884 | 5085.1.1.1 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP | 0.56 | 44.0 | 2.96e-01 | 84.1% | 48.9% |
| 3224585 | 603.1.1.99 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27021 | 0.56 | 41.0 | 4.11e-01 | 84.1% | 76.4% |
| 3903368 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.56 | 49.0 | 4.44e-01 | 99.1% | 96.7% |
| 3605145 | 603.1.1.97 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin, SNARE | 0.55 | 49.0 | 3.80e-01 | 100.0% | 54.4% |
| 3510367 | 603.1.1.99 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27021 | 0.55 | 41.0 | 3.69e-01 | 84.1% | 54.2% |
| 3716055 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.55 | 41.0 | 3.00e-01 | 80.4% | 76.6% |
| 3391706 | 192.5.1.0 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat | 0.55 | 38.0 | 3.61e-01 | 73.8% | 57.7% |
| 3240217 | 603.1.1.105 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF31021 | 0.55 | 43.0 | 4.48e-01 | 84.1% | 98.9% |
| 4025757 | 603.1.1.6 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin_2 | 0.55 | 43.0 | 3.42e-01 | 84.1% | 65.0% |
| 3577228 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.55 | 43.0 | 4.22e-01 | 84.1% | 79.1% |
| 3816833 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 43.0 | 3.19e-01 | 84.1% | 32.5% |
| 4034192 | 603.1.1.11 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › DUF3169 | 0.55 | 44.0 | 3.70e-01 | 90.7% | 53.5% |
| 3794988 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.54 | 47.0 | 4.47e-01 | 100.0% | 81.6% |
| 3497934 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.54 | 42.0 | 3.23e-01 | 84.1% | 52.0% |
| 3469833 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.53 | 41.0 | 4.03e-01 | 86.9% | 75.0% |
| 3367913 | 603.1.1.1 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin | 0.53 | 42.0 | 3.86e-01 | 85.0% | 75.7% |
| 3639947 | 603.1.1.1 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin | 0.53 | 44.0 | 3.62e-01 | 87.9% | 53.5% |
| 3782312 | 4177.1.1.1 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH | 0.53 | 41.0 | 3.02e-01 | 82.2% | 62.7% |
| 4517375 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.53 | 41.0 | 4.12e-01 | 84.1% | 81.8% |
| 5069236 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.53 | 38.0 | 3.24e-01 | 90.7% | 46.3% |
| 4526671 | 604.5.1.0 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) | 0.53 | 48.0 | 3.65e-01 | 100.0% | 48.4% |
| 3755118 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.53 | 46.0 | 4.49e-01 | 100.0% | 87.8% |
| 3927006 | 603.1.1.99 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27021 | 0.52 | 40.0 | 4.31e-01 | 86.9% | 97.8% |
| 3220228 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.52 | 40.0 | 4.12e-01 | 84.1% | 86.7% |
| 3473134 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.52 | 40.0 | 3.48e-01 | 83.2% | 78.3% |
| 5055566 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.52 | 46.0 | 4.48e-01 | 96.3% | 87.0% |
| 3406218 | 604.7.1.0 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A | 0.52 | 40.0 | 4.06e-01 | 83.2% | 94.5% |
| 3894262 | 4177.1.1.1 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH | 0.52 | 39.0 | 2.88e-01 | 80.4% | 68.5% |
| 3626481 | 603.1.1.105 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF31021 | 0.52 | 40.0 | 3.99e-01 | 84.1% | 89.1% |
| 3468208 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.52 | 43.0 | 4.26e-01 | 99.1% | 86.4% |
| 5005480 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.52 | 42.0 | 3.64e-01 | 90.7% | 66.9% |
| 3908132 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.52 | 41.0 | 3.08e-01 | 84.1% | 36.6% |
| 3513988 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.52 | 40.0 | 3.91e-01 | 85.0% | 75.0% |
| 5041256 | 601.4.1.91 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › PF30769 | 0.51 | 40.0 | 4.04e-01 | 84.1% | 91.4% |
| 3884763 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.51 | 39.0 | 3.58e-01 | 84.1% | 60.7% |
| 3196706 | 603.1.1.97 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin, SNARE | 0.51 | 41.0 | 3.20e-01 | 87.9% | 39.6% |
| 3709193 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.51 | 41.0 | 3.01e-01 | 85.0% | 34.3% |
| 3574755 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.51 | 40.0 | 4.05e-01 | 87.9% | 84.5% |
| 3750000 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.51 | 41.0 | 4.14e-01 | 87.9% | 88.6% |
| 3928718 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.51 | 36.0 | 3.39e-01 | 74.8% | 76.4% |
| 3220229 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.51 | 40.0 | 3.93e-01 | 86.9% | 77.5% |
| 3502968 | 3684.1.1.23 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › CA109-like | 0.51 | 45.0 | 3.75e-01 | 100.0% | 86.2% |
| 3758959 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.51 | 40.0 | 2.92e-01 | 87.9% | 28.3% |
| 3841680 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.51 | 44.0 | 4.10e-01 | 100.0% | 76.9% |
| 3559718 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.50 | 40.0 | 4.02e-01 | 86.9% | 84.5% |
| 3938458 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.50 | 40.0 | 2.79e-01 | 86.9% | 24.2% |
| 3713604 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.50 | 40.0 | 2.81e-01 | 85.0% | 27.7% |
| 3758972 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.50 | 39.0 | 3.90e-01 | 84.1% | 84.5% |
| 4928539 | 4323.1.1.0 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C | 0.50 | 39.0 | 3.68e-01 | 82.2% | 94.5% |
D3
high
residues 273-301_355-525
Domain cluster:
rep: IMGVR_UViG_3300029775_000002-3300029775-Ga0134843_100044344__D173-355
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ktwA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.63 | 48.0 | 5.27e-01 | 88.0% | 98.1% |
| 4bg8A01 | 3.30.420.430 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.57 | 35.0 | 4.19e-01 | 87.0% | 92.2% |
| 3zeuB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.56 | 41.0 | 4.42e-01 | 86.5% | 87.8% |
| 3agkA02 | 3.30.420.60 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 | 0.54 | 34.0 | 4.07e-01 | 87.5% | 98.4% |
| 3ossC00 | 2.30.30.830 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 19.0 | 3.15e-01 | 82.0% | 93.8% |
| 3tixB03 | 3.40.50.11490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 36.0 | 4.05e-01 | 98.5% | 91.9% |
| 3id6A01 | 3.30.420.220 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.53 | 29.0 | 3.78e-01 | 99.0% | 98.1% |
| 2jrjA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.52 | 13.0 | 2.51e-01 | 87.0% | 75.0% |
| 4ah6A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 20.0 | 2.65e-01 | 98.5% | 62.3% |
| 6ks6Q03 | 3.50.7.10 | Alpha Beta › 3-Layer(bba) Sandwich › GroEL › GroEL | 0.50 | 33.0 | 3.73e-01 | 89.0% | 86.2% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4941600 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.83 | 63.0 | 7.08e-01 | 82.5% | 97.5% |
| 4945986 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.82 | 69.0 | 6.73e-01 | 86.5% | 98.1% |
| 4007799 | 2484.1.1.211 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605, Cas12f1-like_TNB | 0.82 | 69.0 | 7.08e-01 | 86.5% | 96.8% |
| 4173456 | 2484.1.1.211 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605, Cas12f1-like_TNB | 0.82 | 67.0 | 6.81e-01 | 84.0% | 97.9% |
| 4979486 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.81 | 67.0 | 7.15e-01 | 86.0% | 96.6% |
| 5005094 | 2484.1.1.124 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 | 0.80 | 67.0 | 6.87e-01 | 86.0% | 94.9% |
| 4979574 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.80 | 64.0 | 6.89e-01 | 86.0% | 96.5% |
| 3587862 | 2484.1.1.211 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605, Cas12f1-like_TNB | 0.80 | 67.0 | 6.72e-01 | 86.0% | 97.0% |
| 5017725 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.79 | 66.0 | 6.76e-01 | 86.0% | 95.9% |
| 4941496 | 2484.1.1.124 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 | 0.79 | 64.0 | 6.42e-01 | 83.5% | 86.8% |
| 5071248 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.78 | 65.0 | 6.51e-01 | 86.0% | 97.6% |
| 4934385 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.77 | 64.0 | 6.58e-01 | 86.5% | 97.9% |
| 4977784 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.76 | 71.0 | 6.68e-01 | 98.0% | 97.0% |
| 5004517 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.76 | 63.0 | 6.23e-01 | 86.0% | 92.4% |
| 4979556 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.76 | 63.0 | 6.15e-01 | 86.0% | 92.5% |
| 5005258 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.76 | 63.0 | 6.26e-01 | 86.0% | 94.6% |
| 5072432 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.76 | 63.0 | 6.60e-01 | 86.5% | 97.8% |
| 4979039 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.75 | 63.0 | 6.21e-01 | 87.5% | 95.2% |
| 5025801 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.74 | 62.0 | 6.43e-01 | 86.0% | 98.9% |
| 4941648 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.74 | 61.0 | 6.26e-01 | 86.5% | 95.4% |
| 4972401 | 2484.1.1.124 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 | 0.73 | 69.0 | 6.76e-01 | 98.5% | 93.5% |
| 4931546 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.73 | 61.0 | 6.36e-01 | 86.5% | 96.2% |
| 5003640 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.73 | 64.0 | 6.41e-01 | 90.5% | 97.0% |
| 5076085 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.73 | 61.0 | 5.98e-01 | 86.0% | 91.9% |
| 4978165 | 2484.1.1.124 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 | 0.73 | 60.0 | 6.07e-01 | 86.0% | 94.0% |
| 5073213 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.72 | 65.0 | 6.29e-01 | 95.0% | 97.3% |
| 5055179 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.72 | 64.0 | 6.27e-01 | 92.0% | 95.2% |
| 4996238 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.72 | 58.0 | 6.25e-01 | 86.5% | 98.8% |
| 4934194 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.72 | 66.0 | 6.61e-01 | 96.0% | 98.5% |
| 4975908 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.71 | 60.0 | 5.79e-01 | 86.5% | 93.2% |
| 4962880 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.71 | 67.0 | 6.48e-01 | 100.0% | 98.2% |
| 5011615 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.71 | 67.0 | 6.61e-01 | 99.5% | 98.1% |
| 5075189 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.71 | 59.0 | 5.94e-01 | 87.5% | 95.6% |
| 4976214 | 2484.1.1.124 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 | 0.71 | 62.0 | 6.25e-01 | 91.0% | 99.0% |
| 5075582 | 2484.1.1.124 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 | 0.71 | 66.0 | 6.28e-01 | 98.5% | 96.5% |
| 4946534 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.71 | 60.0 | 5.48e-01 | 89.5% | 94.2% |
| 4992438 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.70 | 55.0 | 6.07e-01 | 89.5% | 98.2% |
| 5051266 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.70 | 66.0 | 6.28e-01 | 98.5% | 95.1% |
| 4999482 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.70 | 66.0 | 6.55e-01 | 100.0% | 98.1% |
| 5011867 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.69 | 55.0 | 6.00e-01 | 86.5% | 97.6% |
| 5075524 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.69 | 60.0 | 6.14e-01 | 92.0% | 99.0% |
| 3603682 | 2484.1.1.211 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605, Cas12f1-like_TNB | 0.68 | 63.0 | 6.10e-01 | 98.5% | 93.8% |
| 4999337 | 2484.1.1.124 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 | 0.67 | 48.0 | 5.45e-01 | 89.0% | 93.5% |
| 3956669 | 2484.1.1.124 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 | 0.66 | 52.0 | 5.55e-01 | 89.0% | 90.6% |
| 4971822 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.65 | 52.0 | 5.59e-01 | 86.0% | 94.9% |
| 4992470 | 896.1.1.0 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related | 0.55 | 18.0 | 3.29e-01 | 99.0% | 95.0% |
| 3985978 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.55 | 25.0 | 3.50e-01 | 93.5% | 90.0% |
| 4095799 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.55 | 44.0 | 3.96e-01 | 84.0% | 98.2% |
| 3238074 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.52 | 32.0 | 3.12e-01 | 86.5% | 55.0% |
D4
medium
residues 302-354
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3r4iA02 | 6.10.140.960 | Special › Helix non-globular › Helix Hairpins › | 0.64 | 36.0 | 3.52e-01 | 100.0% | 48.3% |
| 3e9lA02 | 1.20.80.40 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › Prp8 RNase H domain, fingers region | 0.64 | 49.0 | 3.90e-01 | 96.2% | 44.2% |
| 7jpxA02 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.62 | 56.0 | 4.26e-01 | 100.0% | 75.2% |
| 2rajA02 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.61 | 42.0 | 3.20e-01 | 71.7% | 42.1% |
| 4fo0A03 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.60 | 45.0 | 3.34e-01 | 84.9% | 53.6% |
| 2hgcA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 43.0 | 3.86e-01 | 83.0% | 91.0% |
| 3oq2A00 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 46.0 | 3.77e-01 | 90.6% | 48.5% |
| 3aeiA00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.55 | 48.0 | 3.93e-01 | 96.2% | 88.3% |
| 2rh3A00 | 1.10.1220.190 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › VirC2, RHH domain | 0.54 | 39.0 | 3.13e-01 | 81.1% | 80.2% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3865098 | 4351.1.1.1 ↗ | alpha arrays › ATP12-like › ATP12-like › ATP12-like › ATP12 | 0.87 | 44.0 | 2.77e-01 | 79.2% | 11.3% |
| 3315621 | 170.2.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain | 0.70 | 50.0 | 4.08e-01 | 75.5% | 61.1% |
| 2573905 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.70 | 61.0 | 5.10e-01 | 100.0% | 81.5% |
| 3724169 | 4992.1.1.10 ↗ | extended segments › RelB-like › RelB-like › RelB-like › DUF6594 | 0.69 | 64.0 | 5.22e-01 | 100.0% | 66.7% |
| 3257271 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.67 | 59.0 | 4.88e-01 | 100.0% | 90.5% |
| 4940192 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.64 | 60.0 | 4.51e-01 | 100.0% | 55.3% |
| 4184737 | 2003.1.14.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Aspartate/ornithine carbamoyltransferase › OTCace_N | 0.64 | 47.0 | 3.21e-01 | 77.4% | 78.9% |
| 4008202 | 192.8.1.60 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › DUF2542 | 0.63 | 59.0 | 5.04e-01 | 100.0% | 89.9% |
| 1790170 | 1050.1.1.0 ↗ | alpha arrays › BID domain of Bartonella effector protein (Bep) › BID domain of Bartonella effector protein (Bep) › BID domain of Bartonella effector protein (Bep) | 0.62 | 57.0 | 4.07e-01 | 98.1% | 65.0% |
| 3967231 | 5051.1.1.9 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Transp_cyt_pur | 0.62 | 56.0 | 3.21e-01 | 100.0% | 50.8% |
| 3726323 | 604.5.1.16 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › ArAE_2_N | 0.60 | 54.0 | 3.38e-01 | 100.0% | 59.3% |
| 4608056 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.60 | 53.0 | 3.31e-01 | 98.1% | 75.1% |
| 3417774 | 1.1.9.29 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › Dev_Cell_Death | 0.58 | 43.0 | 3.29e-01 | 83.0% | 59.3% |
| 4596909 | 604.12.1.59 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › UNC-50 | 0.58 | 51.0 | 3.34e-01 | 96.2% | 25.7% |
| 3592511 | 3525.1.1.0 ↗ | alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain | 0.54 | 42.0 | 4.00e-01 | 92.5% | 72.3% |