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js4906-26-2_S25_scaffold_55_prodigal-single.1__X__X__00250

Bact-Vir

js4906-26-2_S25_scaffold_55_prodigal-single.1__X__X__00250

Identity

Kingdom:
phage

Quality

93.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-48
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gaxA00 3.40.1490.10 Alpha Beta › 3-Layer(aba) Sandwich › Bit1 › Bit1 0.61 45.0 3.42e-01 88.6% 32.1%
1wvhA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 40.0 2.97e-01 84.1% 39.4%
1bwvA01 3.30.70.150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RuBisCO large subunit, N-terminal domain 0.51 42.0 3.17e-01 100.0% 85.2%
3e7pA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 35.0 2.24e-01 75.0% 87.4%
1kvdB00 3.30.44.10 Alpha Beta › 2-Layer Sandwich › Smk Toxin, Beta chain › Smk Toxin, beta chain 0.50 34.0 3.07e-01 77.3% 87.0%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4024712 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 44.0 3.35e-01 79.5% 59.1%
169097 2485.1.1.43 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_6 0.60 46.0 3.45e-01 90.9% 30.8%
4662659 304.158.1.2 ↗ a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d 0.52 41.0 2.73e-01 95.5% 75.1%
64876 304.8.1.7 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ALS_ss_C 0.51 39.0 3.33e-01 93.2% 94.1%
3993059 221.1.1.36 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N 0.51 38.0 3.10e-01 95.5% 86.4%