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js4906-26-2_S25_scaffold_55_prodigal-single.1__X__X__00295
Bact-Virjs4906-26-2_S25_scaffold_55_prodigal-single.1__X__X__00295
Identity
- Kingdom:
- phage
Quality
77.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-202
Domain cluster:
rep: NODE_12_length_310542_cov_175.846709.1__X__X__00167__D3-212
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01076.26 best | Mob_Pre | 60.4 | 3.10e-16 | 65.0% | 51.5% |
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4lviA01 | 3.30.930.30 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › | 0.89 | 71.0 | 7.42e-01 | 100.0% | 88.4% |
| 1zpvA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.77 | 30.0 | 4.59e-01 | 70.6% | 84.7% |
| 2qr4A02 | 1.10.287.830 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › putative peptidase helix hairpin domain like | 0.69 | 13.0 | 2.85e-01 | 70.1% | 63.8% |
| 2a2cA02 | 3.30.70.3170 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.68 | 29.0 | 4.30e-01 | 93.9% | 91.7% |
| 2x3gA00 | 3.30.70.1910 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.67 | 31.0 | 3.88e-01 | 76.1% | 70.7% |
| 4ht4A00 | 3.30.930.30 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › | 0.63 | 53.0 | 5.41e-01 | 100.0% | 89.2% |
| 5xyiY00 | 3.30.70.3370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 26.0 | 3.38e-01 | 87.3% | 70.5% |
| 3fezA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 36.0 | 3.85e-01 | 95.4% | 68.0% |
| 4ae5C00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 37.0 | 4.04e-01 | 94.9% | 82.3% |
| 4aqzA00 | 2.60.40.3470 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 23.0 | 2.66e-01 | 100.0% | 50.7% |
| 3gfaA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.54 | 38.0 | 3.83e-01 | 87.3% | 69.9% |
| 5abxA00 | 3.30.760.10 | Alpha Beta › 2-Layer Sandwich › RNA Cap, Translation Initiation Factor Eif4e › RNA Cap, Translation Initiation Factor Eif4e | 0.54 | 35.0 | 3.76e-01 | 89.3% | 74.6% |
| 2wmcA00 | 3.30.760.10 | Alpha Beta › 2-Layer Sandwich › RNA Cap, Translation Initiation Factor Eif4e › RNA Cap, Translation Initiation Factor Eif4e | 0.53 | 36.0 | 3.84e-01 | 89.8% | 77.0% |
| 4e8uA00 | 3.30.70.2890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › XS domain | 0.53 | 29.0 | 3.12e-01 | 97.0% | 59.6% |
| 2jgbA01 | 3.30.760.10 | Alpha Beta › 2-Layer Sandwich › RNA Cap, Translation Initiation Factor Eif4e › RNA Cap, Translation Initiation Factor Eif4e | 0.52 | 37.0 | 3.90e-01 | 90.4% | 80.9% |
| 1wqwA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.52 | 42.0 | 4.36e-01 | 100.0% | 91.4% |
| 3hxiA01 | 3.30.760.10 | Alpha Beta › 2-Layer Sandwich › RNA Cap, Translation Initiation Factor Eif4e › RNA Cap, Translation Initiation Factor Eif4e | 0.51 | 36.0 | 3.85e-01 | 90.4% | 81.3% |
| 4b6uA00 | 3.30.760.10 | Alpha Beta › 2-Layer Sandwich › RNA Cap, Translation Initiation Factor Eif4e › RNA Cap, Translation Initiation Factor Eif4e | 0.51 | 36.0 | 3.58e-01 | 90.9% | 68.1% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3576540 | 304.55.1.2 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Mob_Pre | 0.93 | 72.0 | 7.47e-01 | 100.0% | 83.8% |
| 4233351 | 304.55.1.2 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Mob_Pre | 0.92 | 75.0 | 7.66e-01 | 100.0% | 85.8% |
| 4112064 | 304.55.1.2 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Mob_Pre | 0.90 | 73.0 | 7.05e-01 | 100.0% | 75.8% |
| 3839195 | 304.55.1.13 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Relaxase | 0.76 | 57.0 | 6.08e-01 | 100.0% | 88.2% |
| 4169936 | 304.55.1.0 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains | 0.75 | 52.0 | 6.03e-01 | 100.0% | 95.9% |
| 3281355 | 304.12.1.12 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › GDH_ACT2 | 0.71 | 37.0 | 4.97e-01 | 100.0% | 94.3% |
| 4987385 | 304.4.1.2 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › MIase | 0.68 | 28.0 | 4.12e-01 | 98.0% | 83.3% |
| 3776688 | 304.48.1.4 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc | 0.66 | 39.0 | 3.71e-01 | 78.2% | 49.3% |
| 3937461 | 304.151.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase | 0.66 | 32.0 | 4.18e-01 | 97.5% | 81.8% |
| 3574195 | 317.1.1.1 ↗ | a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › IF4E | 0.64 | 35.0 | 4.17e-01 | 82.7% | 76.9% |
| 222395 | 304.55.1.6 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › MobA_MobL | 0.63 | 53.0 | 5.41e-01 | 100.0% | 89.2% |
| 2875633 | 304.55.1.8 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › TrwC | 0.63 | 59.0 | 5.09e-01 | 100.0% | 67.5% |
| 3348649 | 304.4.1.48 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF7392 | 0.62 | 35.0 | 4.17e-01 | 95.4% | 79.3% |
| 3286903 | 304.55.1.8 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › TrwC | 0.62 | 56.0 | 4.89e-01 | 96.4% | 73.0% |
| 4044908 | 304.8.1.62 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › CitX | 0.60 | 33.0 | 3.57e-01 | 86.3% | 61.2% |
| 5039601 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 40.0 | 4.34e-01 | 73.6% | 81.8% |
| 4147456 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.57 | 28.0 | 3.45e-01 | 80.2% | 70.4% |
| 3579467 | 304.151.1.4 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › PF25899 | 0.55 | 33.0 | 4.04e-01 | 71.6% | 93.6% |
| 3355743 | 317.1.1.1 ↗ | a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › IF4E | 0.54 | 36.0 | 3.97e-01 | 89.8% | 81.2% |
| 3511081 | 317.1.1.1 ↗ | a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › IF4E | 0.54 | 37.0 | 3.99e-01 | 89.3% | 81.8% |
| 4026776 | 317.1.1.1 ↗ | a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › IF4E | 0.53 | 36.0 | 3.86e-01 | 90.4% | 78.3% |
| 3237087 | 317.1.1.1 ↗ | a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › IF4E | 0.52 | 35.0 | 3.56e-01 | 89.3% | 66.5% |
| 3894796 | 317.1.1.1 ↗ | a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › IF4E | 0.52 | 37.0 | 3.81e-01 | 90.4% | 75.7% |
| 3931549 | 317.1.1.1 ↗ | a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › IF4E | 0.52 | 36.0 | 3.86e-01 | 90.4% | 79.4% |
| 3932136 | 317.1.1.1 ↗ | a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › IF4E | 0.52 | 35.0 | 3.53e-01 | 89.3% | 66.5% |
| 162529 | 317.1.1.1 ↗ | a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › IF4E | 0.52 | 37.0 | 3.63e-01 | 90.4% | 65.4% |
| 3261320 | 317.1.1.1 ↗ | a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › IF4E | 0.52 | 37.0 | 3.93e-01 | 90.4% | 83.5% |
| 3478629 | 317.1.1.1 ↗ | a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › IF4E | 0.52 | 36.0 | 3.60e-01 | 90.4% | 68.5% |
| 3457076 | 317.1.1.1 ↗ | a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › IF4E | 0.52 | 36.0 | 3.66e-01 | 90.4% | 71.6% |
| 3268324 | 317.1.1.1 ↗ | a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › IF4E | 0.51 | 35.0 | 3.81e-01 | 89.3% | 80.6% |
| 4227341 | 317.1.1.1 ↗ | a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › IF4E | 0.51 | 36.0 | 3.57e-01 | 90.4% | 67.8% |
| 3609602 | 317.1.1.1 ↗ | a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › IF4E | 0.51 | 35.0 | 3.57e-01 | 90.4% | 70.3% |
| 3519512 | 317.1.1.1 ↗ | a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › IF4E | 0.51 | 37.0 | 3.95e-01 | 90.4% | 84.7% |
| 3699127 | 317.1.1.1 ↗ | a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › IF4E | 0.50 | 35.0 | 3.63e-01 | 90.4% | 74.5% |
D2
medium
residues 247-340
Domain cluster:
representative