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js4906-29-5_S40_scaffold_131_prodigal-single.1__X__X__00038

Bact-Vir

js4906-29-5_S40_scaffold_131_prodigal-single.1__X__X__00038

Identity

Kingdom:
phage

Quality

52.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-71
PDB
Domain cluster: rep: NODE_12_length_310542_cov_175.846709.1__X__X__00216__D74-137
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lcvB01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.64 47.0 5.05e-01 87.1% 96.5%
2o71A00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.62 46.0 4.28e-01 98.6% 61.5%
3nycA02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.57 49.0 3.91e-01 100.0% 53.3%
4i6yA02 3.30.70.420 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain 0.57 46.0 4.03e-01 92.9% 93.6%
5wpjA02 3.30.70.420 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain 0.56 48.0 4.24e-01 98.6% 98.1%
1uxyA01 3.90.78.10 Alpha Beta › Alpha-Beta Complex › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 1 › UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 0.56 45.0 3.80e-01 91.4% 79.0%
4iqfB01 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.55 46.0 3.31e-01 92.9% 94.7%
2hoeA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 39.0 3.14e-01 77.1% 74.8%
7ahdC01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 37.0 2.67e-01 77.1% 48.5%
2yweA03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.52 44.0 4.22e-01 94.3% 93.9%
2m0aA01 3.10.20.350 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 45.0 4.15e-01 98.6% 92.5%
3n01A00 3.30.70.2470 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein-tyrosine phosphatase receptor IA-2 ectodomain 0.51 43.0 4.01e-01 91.4% 95.4%
3tupA02 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.50 40.0 3.64e-01 87.1% 89.6%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3186890 103.1.1.58 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_Rad5 0.66 37.0 4.23e-01 80.0% 76.0%
3477380 103.4.1.3 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Med15_N 0.63 43.0 4.88e-01 84.3% 90.9%
3988242 2002.1.1.90 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MTHFR 0.62 44.0 2.97e-01 75.7% 92.3%
3614211 230.5.1.0 ↗ a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain 0.59 50.0 4.17e-01 100.0% 74.1%
None — 0.59 49.0 3.39e-01 91.4% 77.0%
None — 0.56 44.0 2.82e-01 85.7% 96.1%
3928272 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 44.0 3.51e-01 95.7% 78.7%
3914965 304.51.1.0 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related 0.52 44.0 3.92e-01 100.0% 90.0%
3713000 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.51 44.0 3.85e-01 98.6% 95.5%
D2 high residues 100-191
PDB