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js4906-29-5_S40_scaffold_13_prodigal-single.1__X__X__00026

Bact-Vir

js4906-29-5_S40_scaffold_13_prodigal-single.1__X__X__00026

Identity

Kingdom:
phage

Quality

92.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-112
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fnnB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 55.0 5.75e-01 88.3% 89.3%
7jgsG02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 58.0 6.17e-01 93.7% 100.0%
2dznF00 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.61 35.0 4.33e-01 97.3% 91.3%
1nm3A02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 33.0 3.99e-01 95.5% 95.7%
4q5tA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 49.0 4.41e-01 100.0% 85.7%
4o89A02 3.30.360.20 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › RNA 3'-terminal phosphate cyclase, insert domain 0.52 35.0 3.80e-01 100.0% 80.9%
1ynfA00 3.75.10.20 Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › Succinylarginine dihydrolase 0.51 40.0 2.77e-01 85.6% 97.9%
4ntlA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 46.0 4.32e-01 100.0% 89.0%
4c5cA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 35.0 3.96e-01 90.1% 96.4%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3620712 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.76 64.0 6.55e-01 99.1% 94.3%
4972260 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 54.0 5.83e-01 82.9% 89.5%
3228606 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 57.0 5.69e-01 87.4% 98.3%
3627131 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 58.0 5.73e-01 90.1% 97.4%
3713916 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 56.0 5.85e-01 91.0% 100.0%
4962936 101.1.2.110 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.67 45.0 4.31e-01 87.4% 60.0%
4203720 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.66 52.0 5.54e-01 90.1% 97.9%
1033426 320.4.1.3 ↗ a+b two layers › R3H domain-like › PUB domain › PUB domain › PUB 0.66 52.0 4.98e-01 91.9% 73.4%
3632793 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.66 54.0 5.66e-01 91.9% 97.0%
3974773 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 56.0 5.71e-01 95.5% 99.0%
3226204 7558.1.1.0 ↗ a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase 0.65 52.0 5.56e-01 90.1% 100.0%
4219640 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 57.0 3.66e-01 99.1% 32.7%
4235019 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.64 53.0 5.48e-01 90.1% 99.0%
3698543 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.64 54.0 5.52e-01 94.6% 97.1%
3276654 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.64 57.0 4.18e-01 99.1% 64.4%
4364892 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.63 56.0 4.23e-01 99.1% 63.6%
3252480 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 43.0 4.53e-01 93.7% 81.1%
4955372 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 51.0 5.14e-01 89.2% 95.5%
3588087 101.1.2.99 ↗ alpha arrays › HTH › HTH › winged helix domain › BrxA 0.62 48.0 4.70e-01 82.9% 84.2%
4954654 101.1.2.99 ↗ alpha arrays › HTH › HTH › winged helix domain › BrxA 0.61 48.0 4.68e-01 82.9% 84.2%
3216952 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 43.0 4.76e-01 73.0% 96.5%
4979152 101.1.2.927 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.61 39.0 4.14e-01 85.6% 74.7%
3475867 148.1.3.17 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM_lid 0.59 36.0 4.33e-01 100.0% 90.7%
3642946 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.58 37.0 4.20e-01 99.1% 88.7%
5049997 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.56 46.0 4.13e-01 87.4% 78.7%
3602100 2485.1.1.38 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_3 0.56 36.0 4.15e-01 94.6% 90.0%
3787500 101.1.2.352 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 0.55 40.0 4.41e-01 95.5% 97.6%
3486020 148.1.3.17 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM_lid 0.53 40.0 3.85e-01 78.4% 86.4%
3661352 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.52 40.0 2.73e-01 82.0% 71.5%
4465932 7531.1.1.1 ↗ a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase 0.52 42.0 3.15e-01 88.3% 76.6%
3943294 2007.2.2.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphotyrosine protein phosphatases I-like › PTS_IIB 0.51 37.0 4.00e-01 99.1% 88.4%
4027606 148.1.3.8 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small 0.51 40.0 3.96e-01 100.0% 79.1%